Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1ej8a_PU0_1-40
CI=2.55


[41-99]:
1ej8a_PU0_41-99
CI=4.19


[100-140 ]:
1ej8a_PU0_100-140
CI=2.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1ej8a_PU1_1-40
CI=2.55


[41-57]:
1ej8a_PU1_41-57
CI=0.10


[58-74]:
1ej8a_PU1_58-74
CI=1.54


[75-99]:
1ej8a_PU1_75-99
CI=2.26


[100-140 ]:
1ej8a_PU1_100-140
CI=2.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ej8a_PU2_1-24
CI=0.95


[25-40]:
1ej8a_PU2_25-40
CI=1.75


[41-57]:
1ej8a_PU2_41-57
CI=0.10


[58-74]:
1ej8a_PU2_58-74
CI=1.54


[75-99]:
1ej8a_PU2_75-99
CI=2.26


[100-140 ]:
1ej8a_PU2_100-140
CI=2.21


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1ej8a_PU_1-24
CI=0.95


[25-40]:
1ej8a_PU_25-40
CI=1.75


[41-57]:
1ej8a_PU_41-57
CI=0.10


[58-74]:
1ej8a_PU_58-74
CI=1.54


[75-99]:
1ej8a_PU_75-99
CI=2.26


[100-117]:
1ej8a_PU_100-117
CI=0.00


[118-140 ]:
1ej8a_PU_118-140
CI=0.82