Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-124]:
1ek6a_PU0_1-124
CI=3.02


[125-346 ]:
1ek6a_PU0_125-346
CI=4.24


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU1_1-65
CI=3.28


[66-124]:
1ek6a_PU1_66-124
CI=1.22


[125-346 ]:
1ek6a_PU1_125-346
CI=4.24


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU2_1-65
CI=3.28


[66-124]:
1ek6a_PU2_66-124
CI=1.22


[125-184]:
1ek6a_PU2_125-184
CI=2.63


[185-346 ]:
1ek6a_PU2_185-346
CI=3.74


Level 3
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU3_1-65
CI=3.28


[66-124]:
1ek6a_PU3_66-124
CI=1.22


[125-184]:
1ek6a_PU3_125-184
CI=2.63


[185-250]:
1ek6a_PU3_185-250
CI=1.92


[251-268]:
1ek6a_PU3_251-268
CI=0.00


[269-346 ]:
1ek6a_PU3_269-346
CI=1.28


Level 4
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU4_1-65
CI=3.28


[66-124]:
1ek6a_PU4_66-124
CI=1.22


[125-184]:
1ek6a_PU4_125-184
CI=2.63


[185-200]:
1ek6a_PU4_185-200
CI=0.92


[201-238]:
1ek6a_PU4_201-238
CI=1.24


[239-250]:
1ek6a_PU4_239-250
CI=0.00


[251-268]:
1ek6a_PU4_251-268
CI=0.00


[269-346 ]:
1ek6a_PU4_269-346
CI=1.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU5_1-65
CI=3.28


[66-124]:
1ek6a_PU5_66-124
CI=1.22


[125-184]:
1ek6a_PU5_125-184
CI=2.63


[185-200]:
1ek6a_PU5_185-200
CI=0.92


[201-221]:
1ek6a_PU5_201-221
CI=0.61


[222-238]:
1ek6a_PU5_222-238
CI=1.50


[239-250]:
1ek6a_PU5_239-250
CI=0.00


[251-268]:
1ek6a_PU5_251-268
CI=0.00


[269-346 ]:
1ek6a_PU5_269-346
CI=1.28


Level 6
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU6_1-65
CI=3.28


[66-124]:
1ek6a_PU6_66-124
CI=1.22


[125-184]:
1ek6a_PU6_125-184
CI=2.63


[185-200]:
1ek6a_PU6_185-200
CI=0.92


[201-221]:
1ek6a_PU6_201-221
CI=0.61


[222-238]:
1ek6a_PU6_222-238
CI=1.50


[239-250]:
1ek6a_PU6_239-250
CI=0.00


[251-268]:
1ek6a_PU6_251-268
CI=0.00


[269-323]:
1ek6a_PU6_269-323
CI=1.25


[324-346 ]:
1ek6a_PU6_324-346
CI=0.16


Level 7
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU7_1-65
CI=3.28


[66-124]:
1ek6a_PU7_66-124
CI=1.22


[125-184]:
1ek6a_PU7_125-184
CI=2.63


[185-200]:
1ek6a_PU7_185-200
CI=0.92


[201-221]:
1ek6a_PU7_201-221
CI=0.61


[222-238]:
1ek6a_PU7_222-238
CI=1.50


[239-250]:
1ek6a_PU7_239-250
CI=0.00


[251-268]:
1ek6a_PU7_251-268
CI=0.00


[269-307]:
1ek6a_PU7_269-307
CI=0.48


[308-323]:
1ek6a_PU7_308-323
CI=0.47


[324-346 ]:
1ek6a_PU7_324-346
CI=0.16


Level 8
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU8_1-65
CI=3.28


[66-124]:
1ek6a_PU8_66-124
CI=1.22


[125-184]:
1ek6a_PU8_125-184
CI=2.63


[185-200]:
1ek6a_PU8_185-200
CI=0.92


[201-221]:
1ek6a_PU8_201-221
CI=0.61


[222-238]:
1ek6a_PU8_222-238
CI=1.50


[239-250]:
1ek6a_PU8_239-250
CI=0.00


[251-268]:
1ek6a_PU8_251-268
CI=0.00


[269-291]:
1ek6a_PU8_269-291
CI=0.16


[292-307]:
1ek6a_PU8_292-307
CI=0.00


[308-323]:
1ek6a_PU8_308-323
CI=0.47


[324-346 ]:
1ek6a_PU8_324-346
CI=0.16


Level 9
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU9_1-65
CI=3.28


[66-86]:
1ek6a_PU9_66-86
CI=0.27


[87-124]:
1ek6a_PU9_87-124
CI=0.74


[125-184]:
1ek6a_PU9_125-184
CI=2.63


[185-200]:
1ek6a_PU9_185-200
CI=0.92


[201-221]:
1ek6a_PU9_201-221
CI=0.61


[222-238]:
1ek6a_PU9_222-238
CI=1.50


[239-250]:
1ek6a_PU9_239-250
CI=0.00


[251-268]:
1ek6a_PU9_251-268
CI=0.00


[269-291]:
1ek6a_PU9_269-291
CI=0.16


[292-307]:
1ek6a_PU9_292-307
CI=0.00


[308-323]:
1ek6a_PU9_308-323
CI=0.47


[324-346 ]:
1ek6a_PU9_324-346
CI=0.16


Level 10
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU10_1-65
CI=3.28


[66-86]:
1ek6a_PU10_66-86
CI=0.27


[87-108]:
1ek6a_PU10_87-108
CI=0.92


[109-124]:
1ek6a_PU10_109-124
CI=0.22


[125-184]:
1ek6a_PU10_125-184
CI=2.63


[185-200]:
1ek6a_PU10_185-200
CI=0.92


[201-221]:
1ek6a_PU10_201-221
CI=0.61


[222-238]:
1ek6a_PU10_222-238
CI=1.50


[239-250]:
1ek6a_PU10_239-250
CI=0.00


[251-268]:
1ek6a_PU10_251-268
CI=0.00


[269-291]:
1ek6a_PU10_269-291
CI=0.16


[292-307]:
1ek6a_PU10_292-307
CI=0.00


[308-323]:
1ek6a_PU10_308-323
CI=0.47


[324-346 ]:
1ek6a_PU10_324-346
CI=0.16


Level 11
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ek6a_PU11_1-65
CI=3.28


[66-86]:
1ek6a_PU11_66-86
CI=0.27


[87-108]:
1ek6a_PU11_87-108
CI=0.92


[109-124]:
1ek6a_PU11_109-124
CI=0.22


[125-162]:
1ek6a_PU11_125-162
CI=2.16


[163-184]:
1ek6a_PU11_163-184
CI=0.51


[185-200]:
1ek6a_PU11_185-200
CI=0.92


[201-221]:
1ek6a_PU11_201-221
CI=0.61


[222-238]:
1ek6a_PU11_222-238
CI=1.50


[239-250]:
1ek6a_PU11_239-250
CI=0.00


[251-268]:
1ek6a_PU11_251-268
CI=0.00


[269-291]:
1ek6a_PU11_269-291
CI=0.16


[292-307]:
1ek6a_PU11_292-307
CI=0.00


[308-323]:
1ek6a_PU11_308-323
CI=0.47


[324-346 ]:
1ek6a_PU11_324-346
CI=0.16


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-32]:
1ek6a_PU_1-32
CI=2.30


[33-65]:
1ek6a_PU_33-65
CI=1.48


[66-86]:
1ek6a_PU_66-86
CI=0.27


[87-108]:
1ek6a_PU_87-108
CI=0.92


[109-124]:
1ek6a_PU_109-124
CI=0.22


[125-162]:
1ek6a_PU_125-162
CI=2.16


[163-184]:
1ek6a_PU_163-184
CI=0.51


[185-200]:
1ek6a_PU_185-200
CI=0.92


[201-221]:
1ek6a_PU_201-221
CI=0.61


[222-238]:
1ek6a_PU_222-238
CI=1.50


[239-250]:
1ek6a_PU_239-250
CI=0.00


[251-268]:
1ek6a_PU_251-268
CI=0.00


[269-291]:
1ek6a_PU_269-291
CI=0.16


[292-307]:
1ek6a_PU_292-307
CI=0.00


[308-323]:
1ek6a_PU_308-323
CI=0.47


[324-346 ]:
1ek6a_PU_324-346
CI=0.16