Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekga_PU0_1-17
CI=0.00


[18-58]:
1ekga_PU0_18-58
CI=3.04


[59-119 ]:
1ekga_PU0_59-119
CI=2.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekga_PU1_1-17
CI=0.00


[18-58]:
1ekga_PU1_18-58
CI=3.04


[59-93]:
1ekga_PU1_59-93
CI=3.10


[94-119 ]:
1ekga_PU1_94-119
CI=1.51


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekga_PU_1-17
CI=0.00


[18-38]:
1ekga_PU_18-38
CI=0.96


[39-58]:
1ekga_PU_39-58
CI=2.17


[59-93]:
1ekga_PU_59-93
CI=3.10


[94-119 ]:
1ekga_PU_94-119
CI=1.51