Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-45]:
1ekqa_PU0_1-45
CI=1.91


[46-168]:
1ekqa_PU0_46-168
CI=4.33


[169-253 ]:
1ekqa_PU0_169-253
CI=2.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-45]:
1ekqa_PU1_1-45
CI=1.91


[46-131]:
1ekqa_PU1_46-131
CI=3.69


[132-168]:
1ekqa_PU1_132-168
CI=3.76


[169-253 ]:
1ekqa_PU1_169-253
CI=2.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU2_1-17
CI=0.00


[18-45]:
1ekqa_PU2_18-45
CI=2.42


[46-131]:
1ekqa_PU2_46-131
CI=3.69


[132-168]:
1ekqa_PU2_132-168
CI=3.76


[169-253 ]:
1ekqa_PU2_169-253
CI=2.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU3_1-17
CI=0.00


[18-45]:
1ekqa_PU3_18-45
CI=2.42


[46-131]:
1ekqa_PU3_46-131
CI=3.69


[132-168]:
1ekqa_PU3_132-168
CI=3.76


[169-184]:
1ekqa_PU3_169-184
CI=0.23


[185-206]:
1ekqa_PU3_185-206
CI=2.36


[207-253 ]:
1ekqa_PU3_207-253
CI=1.62


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU4_1-17
CI=0.00


[18-45]:
1ekqa_PU4_18-45
CI=2.42


[46-93]:
1ekqa_PU4_46-93
CI=2.70


[94-131]:
1ekqa_PU4_94-131
CI=2.49


[132-168]:
1ekqa_PU4_132-168
CI=3.76


[169-184]:
1ekqa_PU4_169-184
CI=0.23


[185-206]:
1ekqa_PU4_185-206
CI=2.36


[207-253 ]:
1ekqa_PU4_207-253
CI=1.62


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU5_1-17
CI=0.00


[18-45]:
1ekqa_PU5_18-45
CI=2.42


[46-93]:
1ekqa_PU5_46-93
CI=2.70


[94-131]:
1ekqa_PU5_94-131
CI=2.49


[132-168]:
1ekqa_PU5_132-168
CI=3.76


[169-184]:
1ekqa_PU5_169-184
CI=0.23


[185-206]:
1ekqa_PU5_185-206
CI=2.36


[207-237]:
1ekqa_PU5_207-237
CI=1.40


[238-253 ]:
1ekqa_PU5_238-253
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU6_1-17
CI=0.00


[18-45]:
1ekqa_PU6_18-45
CI=2.42


[46-93]:
1ekqa_PU6_46-93
CI=2.70


[94-131]:
1ekqa_PU6_94-131
CI=2.49


[132-148]:
1ekqa_PU6_132-148
CI=0.11


[149-168]:
1ekqa_PU6_149-168
CI=2.54


[169-184]:
1ekqa_PU6_169-184
CI=0.23


[185-206]:
1ekqa_PU6_185-206
CI=2.36


[207-237]:
1ekqa_PU6_207-237
CI=1.40


[238-253 ]:
1ekqa_PU6_238-253
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU7_1-17
CI=0.00


[18-45]:
1ekqa_PU7_18-45
CI=2.42


[46-93]:
1ekqa_PU7_46-93
CI=2.70


[94-115]:
1ekqa_PU7_94-115
CI=0.84


[116-131]:
1ekqa_PU7_116-131
CI=0.11


[132-148]:
1ekqa_PU7_132-148
CI=0.11


[149-168]:
1ekqa_PU7_149-168
CI=2.54


[169-184]:
1ekqa_PU7_169-184
CI=0.23


[185-206]:
1ekqa_PU7_185-206
CI=2.36


[207-237]:
1ekqa_PU7_207-237
CI=1.40


[238-253 ]:
1ekqa_PU7_238-253
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ekqa_PU_1-17
CI=0.00


[18-45]:
1ekqa_PU_18-45
CI=2.42


[46-77]:
1ekqa_PU_46-77
CI=1.00


[78-93]:
1ekqa_PU_78-93
CI=0.45


[94-115]:
1ekqa_PU_94-115
CI=0.84


[116-131]:
1ekqa_PU_116-131
CI=0.11


[132-148]:
1ekqa_PU_132-148
CI=0.11


[149-168]:
1ekqa_PU_149-168
CI=2.54


[169-184]:
1ekqa_PU_169-184
CI=0.23


[185-206]:
1ekqa_PU_185-206
CI=2.36


[207-237]:
1ekqa_PU_207-237
CI=1.40


[238-253 ]:
1ekqa_PU_238-253
CI=0.00