Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1ekra_PU0_1-26
CI=0.00


[27-44]:
1ekra_PU0_27-44
CI=0.71


[45-143 ]:
1ekra_PU0_45-143
CI=3.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1ekra_PU1_1-26
CI=0.00


[27-44]:
1ekra_PU1_27-44
CI=0.71


[45-116]:
1ekra_PU1_45-116
CI=3.95


[117-143 ]:
1ekra_PU1_117-143
CI=0.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1ekra_PU2_1-26
CI=0.00


[27-44]:
1ekra_PU2_27-44
CI=0.71


[45-68]:
1ekra_PU2_45-68
CI=0.62


[69-102]:
1ekra_PU2_69-102
CI=2.70


[103-116]:
1ekra_PU2_103-116
CI=0.00


[117-143 ]:
1ekra_PU2_117-143
CI=0.56


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1ekra_PU_1-26
CI=0.00


[27-44]:
1ekra_PU_27-44
CI=0.71


[45-68]:
1ekra_PU_45-68
CI=0.62


[69-86]:
1ekra_PU_69-86
CI=0.10


[87-102]:
1ekra_PU_87-102
CI=0.68


[103-116]:
1ekra_PU_103-116
CI=0.00


[117-143 ]:
1ekra_PU_117-143
CI=0.56