Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-220]:
1el5a_PU0_1-220
CI=4.07


[221-315]:
1el5a_PU0_221-315
CI=3.98


[316-385 ]:
1el5a_PU0_316-385
CI=2.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU1_1-46
CI=2.25


[47-148]:
1el5a_PU1_47-148
CI=3.51


[149-220]:
1el5a_PU1_149-220
CI=1.45


[221-315]:
1el5a_PU1_221-315
CI=3.98


[316-385 ]:
1el5a_PU1_316-385
CI=2.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU2_1-46
CI=2.25


[47-148]:
1el5a_PU2_47-148
CI=3.51


[149-167]:
1el5a_PU2_149-167
CI=0.19


[168-220]:
1el5a_PU2_168-220
CI=1.89


[221-315]:
1el5a_PU2_221-315
CI=3.98


[316-385 ]:
1el5a_PU2_316-385
CI=2.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU3_1-46
CI=2.25


[47-148]:
1el5a_PU3_47-148
CI=3.51


[149-167]:
1el5a_PU3_149-167
CI=0.19


[168-197]:
1el5a_PU3_168-197
CI=2.54


[198-220]:
1el5a_PU3_198-220
CI=0.57


[221-315]:
1el5a_PU3_221-315
CI=3.98


[316-385 ]:
1el5a_PU3_316-385
CI=2.70


Level 4
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU4_1-46
CI=2.25


[47-66]:
1el5a_PU4_47-66
CI=1.02


[67-84]:
1el5a_PU4_67-84
CI=0.92


[85-148]:
1el5a_PU4_85-148
CI=2.96


[149-167]:
1el5a_PU4_149-167
CI=0.19


[168-197]:
1el5a_PU4_168-197
CI=2.54


[198-220]:
1el5a_PU4_198-220
CI=0.57


[221-315]:
1el5a_PU4_221-315
CI=3.98


[316-385 ]:
1el5a_PU4_316-385
CI=2.70


Level 5
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU5_1-46
CI=2.25


[47-66]:
1el5a_PU5_47-66
CI=1.02


[67-84]:
1el5a_PU5_67-84
CI=0.92


[85-148]:
1el5a_PU5_85-148
CI=2.96


[149-167]:
1el5a_PU5_149-167
CI=0.19


[168-197]:
1el5a_PU5_168-197
CI=2.54


[198-220]:
1el5a_PU5_198-220
CI=0.57


[221-315]:
1el5a_PU5_221-315
CI=3.98


[316-344]:
1el5a_PU5_316-344
CI=3.09


[345-369]:
1el5a_PU5_345-369
CI=0.45


[370-385 ]:
1el5a_PU5_370-385
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU6_1-46
CI=2.25


[47-66]:
1el5a_PU6_47-66
CI=1.02


[67-84]:
1el5a_PU6_67-84
CI=0.92


[85-148]:
1el5a_PU6_85-148
CI=2.96


[149-167]:
1el5a_PU6_149-167
CI=0.19


[168-197]:
1el5a_PU6_168-197
CI=2.54


[198-220]:
1el5a_PU6_198-220
CI=0.57


[221-271]:
1el5a_PU6_221-271
CI=3.99


[272-292]:
1el5a_PU6_272-292
CI=0.18


[293-315]:
1el5a_PU6_293-315
CI=0.40


[316-344]:
1el5a_PU6_316-344
CI=3.09


[345-369]:
1el5a_PU6_345-369
CI=0.45


[370-385 ]:
1el5a_PU6_370-385
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-46]:
1el5a_PU7_1-46
CI=2.25


[47-66]:
1el5a_PU7_47-66
CI=1.02


[67-84]:
1el5a_PU7_67-84
CI=0.92


[85-101]:
1el5a_PU7_85-101
CI=0.43


[102-118]:
1el5a_PU7_102-118
CI=0.31


[119-148]:
1el5a_PU7_119-148
CI=1.26


[149-167]:
1el5a_PU7_149-167
CI=0.19


[168-197]:
1el5a_PU7_168-197
CI=2.54


[198-220]:
1el5a_PU7_198-220
CI=0.57


[221-271]:
1el5a_PU7_221-271
CI=3.99


[272-292]:
1el5a_PU7_272-292
CI=0.18


[293-315]:
1el5a_PU7_293-315
CI=0.40


[316-344]:
1el5a_PU7_316-344
CI=3.09


[345-369]:
1el5a_PU7_345-369
CI=0.45


[370-385 ]:
1el5a_PU7_370-385
CI=0.23


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-27]:
1el5a_PU_1-27
CI=0.62


[28-46]:
1el5a_PU_28-46
CI=0.39


[47-66]:
1el5a_PU_47-66
CI=1.02


[67-84]:
1el5a_PU_67-84
CI=0.92


[85-101]:
1el5a_PU_85-101
CI=0.43


[102-118]:
1el5a_PU_102-118
CI=0.31


[119-148]:
1el5a_PU_119-148
CI=1.26


[149-167]:
1el5a_PU_149-167
CI=0.19


[168-197]:
1el5a_PU_168-197
CI=2.54


[198-220]:
1el5a_PU_198-220
CI=0.57


[221-271]:
1el5a_PU_221-271
CI=3.99


[272-292]:
1el5a_PU_272-292
CI=0.18


[293-315]:
1el5a_PU_293-315
CI=0.40


[316-344]:
1el5a_PU_316-344
CI=3.09


[345-369]:
1el5a_PU_345-369
CI=0.45


[370-385 ]:
1el5a_PU_370-385
CI=0.23