Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1elva_PU0_1-65
CI=3.80


[66-303 ]:
1elva_PU0_66-303
CI=6.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1elva_PU1_1-65
CI=3.80


[66-82]:
1elva_PU1_66-82
CI=0.21


[83-178]:
1elva_PU1_83-178
CI=4.60


[179-303 ]:
1elva_PU1_179-303
CI=4.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1elva_PU2_1-65
CI=3.80


[66-82]:
1elva_PU2_66-82
CI=0.21


[83-136]:
1elva_PU2_83-136
CI=3.38


[137-160]:
1elva_PU2_137-160
CI=1.08


[161-178]:
1elva_PU2_161-178
CI=0.20


[179-303 ]:
1elva_PU2_179-303
CI=4.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-65]:
1elva_PU3_1-65
CI=3.80


[66-82]:
1elva_PU3_66-82
CI=0.21


[83-136]:
1elva_PU3_83-136
CI=3.38


[137-160]:
1elva_PU3_137-160
CI=1.08


[161-178]:
1elva_PU3_161-178
CI=0.20


[179-194]:
1elva_PU3_179-194
CI=0.12


[195-290]:
1elva_PU3_195-290
CI=4.75


[291-303 ]:
1elva_PU3_291-303
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-65]:
1elva_PU4_1-65
CI=3.80


[66-82]:
1elva_PU4_66-82
CI=0.21


[83-136]:
1elva_PU4_83-136
CI=3.38


[137-160]:
1elva_PU4_137-160
CI=1.08


[161-178]:
1elva_PU4_161-178
CI=0.20


[179-194]:
1elva_PU4_179-194
CI=0.12


[195-214]:
1elva_PU4_195-214
CI=2.07


[215-245]:
1elva_PU4_215-245
CI=1.58


[246-290]:
1elva_PU4_246-290
CI=3.42


[291-303 ]:
1elva_PU4_291-303
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1elva_PU5_1-29
CI=2.09


[30-65]:
1elva_PU5_30-65
CI=2.33


[66-82]:
1elva_PU5_66-82
CI=0.21


[83-136]:
1elva_PU5_83-136
CI=3.38


[137-160]:
1elva_PU5_137-160
CI=1.08


[161-178]:
1elva_PU5_161-178
CI=0.20


[179-194]:
1elva_PU5_179-194
CI=0.12


[195-214]:
1elva_PU5_195-214
CI=2.07


[215-245]:
1elva_PU5_215-245
CI=1.58


[246-290]:
1elva_PU5_246-290
CI=3.42


[291-303 ]:
1elva_PU5_291-303
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1elva_PU6_1-29
CI=2.09


[30-65]:
1elva_PU6_30-65
CI=2.33


[66-82]:
1elva_PU6_66-82
CI=0.21


[83-136]:
1elva_PU6_83-136
CI=3.38


[137-160]:
1elva_PU6_137-160
CI=1.08


[161-178]:
1elva_PU6_161-178
CI=0.20


[179-194]:
1elva_PU6_179-194
CI=0.12


[195-214]:
1elva_PU6_195-214
CI=2.07


[215-245]:
1elva_PU6_215-245
CI=1.58


[246-269]:
1elva_PU6_246-269
CI=1.20


[270-290]:
1elva_PU6_270-290
CI=2.34


[291-303 ]:
1elva_PU6_291-303
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1elva_PU7_1-29
CI=2.09


[30-65]:
1elva_PU7_30-65
CI=2.33


[66-82]:
1elva_PU7_66-82
CI=0.21


[83-117]:
1elva_PU7_83-117
CI=2.39


[118-136]:
1elva_PU7_118-136
CI=1.57


[137-160]:
1elva_PU7_137-160
CI=1.08


[161-178]:
1elva_PU7_161-178
CI=0.20


[179-194]:
1elva_PU7_179-194
CI=0.12


[195-214]:
1elva_PU7_195-214
CI=2.07


[215-245]:
1elva_PU7_215-245
CI=1.58


[246-269]:
1elva_PU7_246-269
CI=1.20


[270-290]:
1elva_PU7_270-290
CI=2.34


[291-303 ]:
1elva_PU7_291-303
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-29]:
1elva_PU_1-29
CI=2.09


[30-49]:
1elva_PU_30-49
CI=0.19


[50-65]:
1elva_PU_50-65
CI=0.57


[66-82]:
1elva_PU_66-82
CI=0.21


[83-117]:
1elva_PU_83-117
CI=2.39


[118-136]:
1elva_PU_118-136
CI=1.57


[137-160]:
1elva_PU_137-160
CI=1.08


[161-178]:
1elva_PU_161-178
CI=0.20


[179-194]:
1elva_PU_179-194
CI=0.12


[195-214]:
1elva_PU_195-214
CI=2.07


[215-245]:
1elva_PU_215-245
CI=1.58


[246-269]:
1elva_PU_246-269
CI=1.20


[270-290]:
1elva_PU_270-290
CI=2.34


[291-303 ]:
1elva_PU_291-303
CI=0.00