Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1en2a_PU0_1-41
CI=4.43


[42-85 ]:
1en2a_PU0_42-85
CI=4.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1en2a_PU1_1-41
CI=4.43


[42-58]:
1en2a_PU1_42-58
CI=1.20


[59-85 ]:
1en2a_PU1_59-85
CI=4.19


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1en2a_PU_1-24
CI=3.44


[25-41]:
1en2a_PU_25-41
CI=1.41


[42-58]:
1en2a_PU_42-58
CI=1.20


[59-85 ]:
1en2a_PU_59-85
CI=4.19