Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1eoka_PU0_1-72
CI=2.62


[73-202]:
1eoka_PU0_73-202
CI=4.20


[203-282 ]:
1eoka_PU0_203-282
CI=3.41


Level 1
PU
Molecule needs Java 1.4 Structure


[1-72]:
1eoka_PU1_1-72
CI=2.62


[73-128]:
1eoka_PU1_73-128
CI=2.34


[129-144]:
1eoka_PU1_129-144
CI=1.27


[145-202]:
1eoka_PU1_145-202
CI=2.92


[203-282 ]:
1eoka_PU1_203-282
CI=3.41


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU2_1-33
CI=2.07


[34-72]:
1eoka_PU2_34-72
CI=0.88


[73-128]:
1eoka_PU2_73-128
CI=2.34


[129-144]:
1eoka_PU2_129-144
CI=1.27


[145-202]:
1eoka_PU2_145-202
CI=2.92


[203-282 ]:
1eoka_PU2_203-282
CI=3.41


Level 3
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU3_1-33
CI=2.07


[34-56]:
1eoka_PU3_34-56
CI=0.98


[57-72]:
1eoka_PU3_57-72
CI=0.00


[73-128]:
1eoka_PU3_73-128
CI=2.34


[129-144]:
1eoka_PU3_129-144
CI=1.27


[145-202]:
1eoka_PU3_145-202
CI=2.92


[203-282 ]:
1eoka_PU3_203-282
CI=3.41


Level 4
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU4_1-33
CI=2.07


[34-56]:
1eoka_PU4_34-56
CI=0.98


[57-72]:
1eoka_PU4_57-72
CI=0.00


[73-128]:
1eoka_PU4_73-128
CI=2.34


[129-144]:
1eoka_PU4_129-144
CI=1.27


[145-202]:
1eoka_PU4_145-202
CI=2.92


[203-234]:
1eoka_PU4_203-234
CI=1.18


[235-282 ]:
1eoka_PU4_235-282
CI=2.30


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU5_1-33
CI=2.07


[34-56]:
1eoka_PU5_34-56
CI=0.98


[57-72]:
1eoka_PU5_57-72
CI=0.00


[73-128]:
1eoka_PU5_73-128
CI=2.34


[129-144]:
1eoka_PU5_129-144
CI=1.27


[145-160]:
1eoka_PU5_145-160
CI=0.00


[161-179]:
1eoka_PU5_161-179
CI=1.76


[180-202]:
1eoka_PU5_180-202
CI=0.57


[203-234]:
1eoka_PU5_203-234
CI=1.18


[235-282 ]:
1eoka_PU5_235-282
CI=2.30


Level 6
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU6_1-33
CI=2.07


[34-56]:
1eoka_PU6_34-56
CI=0.98


[57-72]:
1eoka_PU6_57-72
CI=0.00


[73-100]:
1eoka_PU6_73-100
CI=1.14


[101-128]:
1eoka_PU6_101-128
CI=0.26


[129-144]:
1eoka_PU6_129-144
CI=1.27


[145-160]:
1eoka_PU6_145-160
CI=0.00


[161-179]:
1eoka_PU6_161-179
CI=1.76


[180-202]:
1eoka_PU6_180-202
CI=0.57


[203-234]:
1eoka_PU6_203-234
CI=1.18


[235-282 ]:
1eoka_PU6_235-282
CI=2.30


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1eoka_PU7_1-33
CI=2.07


[34-56]:
1eoka_PU7_34-56
CI=0.98


[57-72]:
1eoka_PU7_57-72
CI=0.00


[73-100]:
1eoka_PU7_73-100
CI=1.14


[101-128]:
1eoka_PU7_101-128
CI=0.26


[129-144]:
1eoka_PU7_129-144
CI=1.27


[145-160]:
1eoka_PU7_145-160
CI=0.00


[161-179]:
1eoka_PU7_161-179
CI=1.76


[180-202]:
1eoka_PU7_180-202
CI=0.57


[203-234]:
1eoka_PU7_203-234
CI=1.18


[235-263]:
1eoka_PU7_235-263
CI=0.77


[264-282 ]:
1eoka_PU7_264-282
CI=0.38


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1eoka_PU_1-17
CI=0.00


[18-33]:
1eoka_PU_18-33
CI=0.11


[34-56]:
1eoka_PU_34-56
CI=0.98


[57-72]:
1eoka_PU_57-72
CI=0.00


[73-100]:
1eoka_PU_73-100
CI=1.14


[101-128]:
1eoka_PU_101-128
CI=0.26


[129-144]:
1eoka_PU_129-144
CI=1.27


[145-160]:
1eoka_PU_145-160
CI=0.00


[161-179]:
1eoka_PU_161-179
CI=1.76


[180-202]:
1eoka_PU_180-202
CI=0.57


[203-234]:
1eoka_PU_203-234
CI=1.18


[235-263]:
1eoka_PU_235-263
CI=0.77


[264-282 ]:
1eoka_PU_264-282
CI=0.38