Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU0_1-17
CI=0.22


[18-357 ]:
1epxa_PU0_18-357
CI=4.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU1_1-17
CI=0.22


[18-116]:
1epxa_PU1_18-116
CI=2.42


[117-274]:
1epxa_PU1_117-274
CI=4.05


[275-357 ]:
1epxa_PU1_275-357
CI=2.87


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU2_1-17
CI=0.22


[18-116]:
1epxa_PU2_18-116
CI=2.42


[117-274]:
1epxa_PU2_117-274
CI=4.05


[275-315]:
1epxa_PU2_275-315
CI=2.14


[316-339]:
1epxa_PU2_316-339
CI=1.80


[340-357 ]:
1epxa_PU2_340-357
CI=0.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU3_1-17
CI=0.22


[18-44]:
1epxa_PU3_18-44
CI=0.14


[45-65]:
1epxa_PU3_45-65
CI=0.96


[66-116]:
1epxa_PU3_66-116
CI=2.45


[117-274]:
1epxa_PU3_117-274
CI=4.05


[275-315]:
1epxa_PU3_275-315
CI=2.14


[316-339]:
1epxa_PU3_316-339
CI=1.80


[340-357 ]:
1epxa_PU3_340-357
CI=0.50


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU4_1-17
CI=0.22


[18-44]:
1epxa_PU4_18-44
CI=0.14


[45-65]:
1epxa_PU4_45-65
CI=0.96


[66-116]:
1epxa_PU4_66-116
CI=2.45


[117-199]:
1epxa_PU4_117-199
CI=3.57


[200-274]:
1epxa_PU4_200-274
CI=2.18


[275-315]:
1epxa_PU4_275-315
CI=2.14


[316-339]:
1epxa_PU4_316-339
CI=1.80


[340-357 ]:
1epxa_PU4_340-357
CI=0.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU5_1-17
CI=0.22


[18-44]:
1epxa_PU5_18-44
CI=0.14


[45-65]:
1epxa_PU5_45-65
CI=0.96


[66-116]:
1epxa_PU5_66-116
CI=2.45


[117-199]:
1epxa_PU5_117-199
CI=3.57


[200-220]:
1epxa_PU5_200-220
CI=0.09


[221-239]:
1epxa_PU5_221-239
CI=0.00


[240-274]:
1epxa_PU5_240-274
CI=0.65


[275-315]:
1epxa_PU5_275-315
CI=2.14


[316-339]:
1epxa_PU5_316-339
CI=1.80


[340-357 ]:
1epxa_PU5_340-357
CI=0.50


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU6_1-17
CI=0.22


[18-44]:
1epxa_PU6_18-44
CI=0.14


[45-65]:
1epxa_PU6_45-65
CI=0.96


[66-116]:
1epxa_PU6_66-116
CI=2.45


[117-199]:
1epxa_PU6_117-199
CI=3.57


[200-220]:
1epxa_PU6_200-220
CI=0.09


[221-239]:
1epxa_PU6_221-239
CI=0.00


[240-258]:
1epxa_PU6_240-258
CI=0.69


[259-274]:
1epxa_PU6_259-274
CI=0.00


[275-315]:
1epxa_PU6_275-315
CI=2.14


[316-339]:
1epxa_PU6_316-339
CI=1.80


[340-357 ]:
1epxa_PU6_340-357
CI=0.50


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU7_1-17
CI=0.22


[18-44]:
1epxa_PU7_18-44
CI=0.14


[45-65]:
1epxa_PU7_45-65
CI=0.96


[66-116]:
1epxa_PU7_66-116
CI=2.45


[117-136]:
1epxa_PU7_117-136
CI=2.81


[137-152]:
1epxa_PU7_137-152
CI=0.00


[153-199]:
1epxa_PU7_153-199
CI=2.44


[200-220]:
1epxa_PU7_200-220
CI=0.09


[221-239]:
1epxa_PU7_221-239
CI=0.00


[240-258]:
1epxa_PU7_240-258
CI=0.69


[259-274]:
1epxa_PU7_259-274
CI=0.00


[275-315]:
1epxa_PU7_275-315
CI=2.14


[316-339]:
1epxa_PU7_316-339
CI=1.80


[340-357 ]:
1epxa_PU7_340-357
CI=0.50


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1epxa_PU_1-17
CI=0.22


[18-44]:
1epxa_PU_18-44
CI=0.14


[45-65]:
1epxa_PU_45-65
CI=0.96


[66-86]:
1epxa_PU_66-86
CI=0.00


[87-116]:
1epxa_PU_87-116
CI=2.03


[117-136]:
1epxa_PU_117-136
CI=2.81


[137-152]:
1epxa_PU_137-152
CI=0.00


[153-199]:
1epxa_PU_153-199
CI=2.44


[200-220]:
1epxa_PU_200-220
CI=0.09


[221-239]:
1epxa_PU_221-239
CI=0.00


[240-258]:
1epxa_PU_240-258
CI=0.69


[259-274]:
1epxa_PU_259-274
CI=0.00


[275-315]:
1epxa_PU_275-315
CI=2.14


[316-339]:
1epxa_PU_316-339
CI=1.80


[340-357 ]:
1epxa_PU_340-357
CI=0.50