Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1eq2a_PU0_1-76
CI=3.55


[77-272 ]:
1eq2a_PU0_77-272
CI=3.75


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1eq2a_PU1_1-76
CI=3.55


[77-166]:
1eq2a_PU1_77-166
CI=3.18


[167-272 ]:
1eq2a_PU1_167-272
CI=2.62


Level 2
PU
Molecule needs Java 1.4 Structure


[1-76]:
1eq2a_PU2_1-76
CI=3.55


[77-118]:
1eq2a_PU2_77-118
CI=0.40


[119-134]:
1eq2a_PU2_119-134
CI=1.26


[135-166]:
1eq2a_PU2_135-166
CI=0.23


[167-272 ]:
1eq2a_PU2_167-272
CI=2.62


Level 3
PU
Molecule needs Java 1.4 Structure


[1-76]:
1eq2a_PU3_1-76
CI=3.55


[77-95]:
1eq2a_PU3_77-95
CI=0.20


[96-118]:
1eq2a_PU3_96-118
CI=0.40


[119-134]:
1eq2a_PU3_119-134
CI=1.26


[135-166]:
1eq2a_PU3_135-166
CI=0.23


[167-272 ]:
1eq2a_PU3_167-272
CI=2.62


Level 4
PU
Molecule needs Java 1.4 Structure


[1-76]:
1eq2a_PU4_1-76
CI=3.55


[77-95]:
1eq2a_PU4_77-95
CI=0.20


[96-118]:
1eq2a_PU4_96-118
CI=0.40


[119-134]:
1eq2a_PU4_119-134
CI=1.26


[135-166]:
1eq2a_PU4_135-166
CI=0.23


[167-193]:
1eq2a_PU4_167-193
CI=1.02


[194-260]:
1eq2a_PU4_194-260
CI=2.09


[261-272 ]:
1eq2a_PU4_261-272
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-53]:
1eq2a_PU5_1-53
CI=3.37


[54-76]:
1eq2a_PU5_54-76
CI=0.15


[77-95]:
1eq2a_PU5_77-95
CI=0.20


[96-118]:
1eq2a_PU5_96-118
CI=0.40


[119-134]:
1eq2a_PU5_119-134
CI=1.26


[135-166]:
1eq2a_PU5_135-166
CI=0.23


[167-193]:
1eq2a_PU5_167-193
CI=1.02


[194-260]:
1eq2a_PU5_194-260
CI=2.09


[261-272 ]:
1eq2a_PU5_261-272
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-53]:
1eq2a_PU6_1-53
CI=3.37


[54-76]:
1eq2a_PU6_54-76
CI=0.15


[77-95]:
1eq2a_PU6_77-95
CI=0.20


[96-118]:
1eq2a_PU6_96-118
CI=0.40


[119-134]:
1eq2a_PU6_119-134
CI=1.26


[135-166]:
1eq2a_PU6_135-166
CI=0.23


[167-193]:
1eq2a_PU6_167-193
CI=1.02


[194-243]:
1eq2a_PU6_194-243
CI=1.70


[244-260]:
1eq2a_PU6_244-260
CI=0.00


[261-272 ]:
1eq2a_PU6_261-272
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-53]:
1eq2a_PU7_1-53
CI=3.37


[54-76]:
1eq2a_PU7_54-76
CI=0.15


[77-95]:
1eq2a_PU7_77-95
CI=0.20


[96-118]:
1eq2a_PU7_96-118
CI=0.40


[119-134]:
1eq2a_PU7_119-134
CI=1.26


[135-166]:
1eq2a_PU7_135-166
CI=0.23


[167-193]:
1eq2a_PU7_167-193
CI=1.02


[194-224]:
1eq2a_PU7_194-224
CI=0.61


[225-243]:
1eq2a_PU7_225-243
CI=0.40


[244-260]:
1eq2a_PU7_244-260
CI=0.00


[261-272 ]:
1eq2a_PU7_261-272
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1eq2a_PU_1-30
CI=2.08


[31-53]:
1eq2a_PU_31-53
CI=0.82


[54-76]:
1eq2a_PU_54-76
CI=0.15


[77-95]:
1eq2a_PU_77-95
CI=0.20


[96-118]:
1eq2a_PU_96-118
CI=0.40


[119-134]:
1eq2a_PU_119-134
CI=1.26


[135-166]:
1eq2a_PU_135-166
CI=0.23


[167-193]:
1eq2a_PU_167-193
CI=1.02


[194-224]:
1eq2a_PU_194-224
CI=0.61


[225-243]:
1eq2a_PU_225-243
CI=0.40


[244-260]:
1eq2a_PU_244-260
CI=0.00


[261-272 ]:
1eq2a_PU_261-272
CI=0.00