Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1erv0_PU0_1-29
CI=0.19


[30-51]:
1erv0_PU0_30-51
CI=0.08


[52-105 ]:
1erv0_PU0_52-105
CI=1.58


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-29]:
1erv0_PU_1-29
CI=0.19


[30-51]:
1erv0_PU_30-51
CI=0.08


[52-73]:
1erv0_PU_52-73
CI=0.57


[74-105 ]:
1erv0_PU_74-105
CI=2.00