Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU0_1-25
CI=2.18


[26-196]:
1es5a_PU0_26-196
CI=4.27


[197-260 ]:
1es5a_PU0_197-260
CI=3.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU1_1-25
CI=2.18


[26-173]:
1es5a_PU1_26-173
CI=4.05


[174-196]:
1es5a_PU1_174-196
CI=2.80


[197-260 ]:
1es5a_PU1_197-260
CI=3.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU2_1-25
CI=2.18


[26-49]:
1es5a_PU2_26-49
CI=0.08


[50-101]:
1es5a_PU2_50-101
CI=3.72


[102-173]:
1es5a_PU2_102-173
CI=2.21


[174-196]:
1es5a_PU2_174-196
CI=2.80


[197-260 ]:
1es5a_PU2_197-260
CI=3.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU3_1-25
CI=2.18


[26-49]:
1es5a_PU3_26-49
CI=0.08


[50-101]:
1es5a_PU3_50-101
CI=3.72


[102-157]:
1es5a_PU3_102-157
CI=2.70


[158-173]:
1es5a_PU3_158-173
CI=0.35


[174-196]:
1es5a_PU3_174-196
CI=2.80


[197-260 ]:
1es5a_PU3_197-260
CI=3.50


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU4_1-25
CI=2.18


[26-49]:
1es5a_PU4_26-49
CI=0.08


[50-101]:
1es5a_PU4_50-101
CI=3.72


[102-119]:
1es5a_PU4_102-119
CI=2.87


[120-157]:
1es5a_PU4_120-157
CI=2.25


[158-173]:
1es5a_PU4_158-173
CI=0.35


[174-196]:
1es5a_PU4_174-196
CI=2.80


[197-260 ]:
1es5a_PU4_197-260
CI=3.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU5_1-25
CI=2.18


[26-49]:
1es5a_PU5_26-49
CI=0.08


[50-101]:
1es5a_PU5_50-101
CI=3.72


[102-119]:
1es5a_PU5_102-119
CI=2.87


[120-157]:
1es5a_PU5_120-157
CI=2.25


[158-173]:
1es5a_PU5_158-173
CI=0.35


[174-196]:
1es5a_PU5_174-196
CI=2.80


[197-239]:
1es5a_PU5_197-239
CI=3.62


[240-260 ]:
1es5a_PU5_240-260
CI=0.18


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU6_1-25
CI=2.18


[26-49]:
1es5a_PU6_26-49
CI=0.08


[50-101]:
1es5a_PU6_50-101
CI=3.72


[102-119]:
1es5a_PU6_102-119
CI=2.87


[120-136]:
1es5a_PU6_120-136
CI=0.43


[137-157]:
1es5a_PU6_137-157
CI=0.98


[158-173]:
1es5a_PU6_158-173
CI=0.35


[174-196]:
1es5a_PU6_174-196
CI=2.80


[197-239]:
1es5a_PU6_197-239
CI=3.62


[240-260 ]:
1es5a_PU6_240-260
CI=0.18


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU7_1-25
CI=2.18


[26-49]:
1es5a_PU7_26-49
CI=0.08


[50-83]:
1es5a_PU7_50-83
CI=2.45


[84-101]:
1es5a_PU7_84-101
CI=1.74


[102-119]:
1es5a_PU7_102-119
CI=2.87


[120-136]:
1es5a_PU7_120-136
CI=0.43


[137-157]:
1es5a_PU7_137-157
CI=0.98


[158-173]:
1es5a_PU7_158-173
CI=0.35


[174-196]:
1es5a_PU7_174-196
CI=2.80


[197-239]:
1es5a_PU7_197-239
CI=3.62


[240-260 ]:
1es5a_PU7_240-260
CI=0.18


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU8_1-25
CI=2.18


[26-49]:
1es5a_PU8_26-49
CI=0.08


[50-83]:
1es5a_PU8_50-83
CI=2.45


[84-101]:
1es5a_PU8_84-101
CI=1.74


[102-119]:
1es5a_PU8_102-119
CI=2.87


[120-136]:
1es5a_PU8_120-136
CI=0.43


[137-157]:
1es5a_PU8_137-157
CI=0.98


[158-173]:
1es5a_PU8_158-173
CI=0.35


[174-196]:
1es5a_PU8_174-196
CI=2.80


[197-214]:
1es5a_PU8_197-214
CI=1.24


[215-239]:
1es5a_PU8_215-239
CI=2.13


[240-260 ]:
1es5a_PU8_240-260
CI=0.18


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1es5a_PU_1-25
CI=2.18


[26-49]:
1es5a_PU_26-49
CI=0.08


[50-67]:
1es5a_PU_50-67
CI=0.00


[68-83]:
1es5a_PU_68-83
CI=0.00


[84-101]:
1es5a_PU_84-101
CI=1.74


[102-119]:
1es5a_PU_102-119
CI=2.87


[120-136]:
1es5a_PU_120-136
CI=0.43


[137-157]:
1es5a_PU_137-157
CI=0.98


[158-173]:
1es5a_PU_158-173
CI=0.35


[174-196]:
1es5a_PU_174-196
CI=2.80


[197-214]:
1es5a_PU_197-214
CI=1.24


[215-239]:
1es5a_PU_215-239
CI=2.13


[240-260 ]:
1es5a_PU_240-260
CI=0.18