Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-190]:
1evya_PU0_1-190
CI=4.50


[191-346 ]:
1evya_PU0_191-346
CI=3.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-190]:
1evya_PU1_1-190
CI=4.50


[191-328]:
1evya_PU1_191-328
CI=3.57


[329-346 ]:
1evya_PU1_329-346
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU2_1-78
CI=3.47


[79-143]:
1evya_PU2_79-143
CI=3.18


[144-190]:
1evya_PU2_144-190
CI=3.18


[191-328]:
1evya_PU2_191-328
CI=3.57


[329-346 ]:
1evya_PU2_329-346
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU3_1-78
CI=3.47


[79-143]:
1evya_PU3_79-143
CI=3.18


[144-190]:
1evya_PU3_144-190
CI=3.18


[191-292]:
1evya_PU3_191-292
CI=3.53


[293-328]:
1evya_PU3_293-328
CI=0.98


[329-346 ]:
1evya_PU3_329-346
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU4_1-78
CI=3.47


[79-143]:
1evya_PU4_79-143
CI=3.18


[144-190]:
1evya_PU4_144-190
CI=3.18


[191-292]:
1evya_PU4_191-292
CI=3.53


[293-312]:
1evya_PU4_293-312
CI=0.45


[313-328]:
1evya_PU4_313-328
CI=1.13


[329-346 ]:
1evya_PU4_329-346
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU5_1-78
CI=3.47


[79-143]:
1evya_PU5_79-143
CI=3.18


[144-190]:
1evya_PU5_144-190
CI=3.18


[191-261]:
1evya_PU5_191-261
CI=2.75


[262-292]:
1evya_PU5_262-292
CI=1.14


[293-312]:
1evya_PU5_293-312
CI=0.45


[313-328]:
1evya_PU5_313-328
CI=1.13


[329-346 ]:
1evya_PU5_329-346
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU6_1-78
CI=3.47


[79-143]:
1evya_PU6_79-143
CI=3.18


[144-190]:
1evya_PU6_144-190
CI=3.18


[191-206]:
1evya_PU6_191-206
CI=0.00


[207-228]:
1evya_PU6_207-228
CI=0.67


[229-261]:
1evya_PU6_229-261
CI=0.85


[262-292]:
1evya_PU6_262-292
CI=1.14


[293-312]:
1evya_PU6_293-312
CI=0.45


[313-328]:
1evya_PU6_313-328
CI=1.13


[329-346 ]:
1evya_PU6_329-346
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-78]:
1evya_PU7_1-78
CI=3.47


[79-143]:
1evya_PU7_79-143
CI=3.18


[144-190]:
1evya_PU7_144-190
CI=3.18


[191-206]:
1evya_PU7_191-206
CI=0.00


[207-228]:
1evya_PU7_207-228
CI=0.67


[229-245]:
1evya_PU7_229-245
CI=0.33


[246-261]:
1evya_PU7_246-261
CI=0.45


[262-292]:
1evya_PU7_262-292
CI=1.14


[293-312]:
1evya_PU7_293-312
CI=0.45


[313-328]:
1evya_PU7_313-328
CI=1.13


[329-346 ]:
1evya_PU7_329-346
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-37]:
1evya_PU_1-37
CI=2.53


[38-61]:
1evya_PU_38-61
CI=1.16


[62-78]:
1evya_PU_62-78
CI=0.11


[79-143]:
1evya_PU_79-143
CI=3.18


[144-190]:
1evya_PU_144-190
CI=3.18


[191-206]:
1evya_PU_191-206
CI=0.00


[207-228]:
1evya_PU_207-228
CI=0.67


[229-245]:
1evya_PU_229-245
CI=0.33


[246-261]:
1evya_PU_246-261
CI=0.45


[262-292]:
1evya_PU_262-292
CI=1.14


[293-312]:
1evya_PU_293-312
CI=0.45


[313-328]:
1evya_PU_313-328
CI=1.13


[329-346 ]:
1evya_PU_329-346
CI=0.00