Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1ew4a_PU0_1-62
CI=2.39


[63-106 ]:
1ew4a_PU0_63-106
CI=2.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-62]:
1ew4a_PU1_1-62
CI=2.39


[63-87]:
1ew4a_PU1_63-87
CI=2.19


[88-106 ]:
1ew4a_PU1_88-106
CI=1.54


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ew4a_PU2_1-16
CI=0.00


[17-53]:
1ew4a_PU2_17-53
CI=2.63


[54-62]:
1ew4a_PU2_54-62
CI=0.39


[63-87]:
1ew4a_PU2_63-87
CI=2.19


[88-106 ]:
1ew4a_PU2_88-106
CI=1.54


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ew4a_PU_1-16
CI=0.00


[17-34]:
1ew4a_PU_17-34
CI=0.81


[35-53]:
1ew4a_PU_35-53
CI=1.96


[54-62]:
1ew4a_PU_54-62
CI=0.39


[63-87]:
1ew4a_PU_63-87
CI=2.19


[88-106 ]:
1ew4a_PU_88-106
CI=1.54