Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ew6a_PU0_1-65
CI=1.11


[66-137 ]:
1ew6a_PU0_66-137
CI=2.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ew6a_PU1_1-18
CI=0.29


[19-52]:
1ew6a_PU1_19-52
CI=0.44


[53-65]:
1ew6a_PU1_53-65
CI=0.00


[66-137 ]:
1ew6a_PU1_66-137
CI=2.09


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ew6a_PU_1-18
CI=0.29


[19-52]:
1ew6a_PU_19-52
CI=0.44


[53-65]:
1ew6a_PU_53-65
CI=0.00


[66-94]:
1ew6a_PU_66-94
CI=0.71


[95-125]:
1ew6a_PU_95-125
CI=1.26


[126-137 ]:
1ew6a_PU_126-137
CI=0.14