Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1ey4a_PU0_1-36
CI=2.82


[37-52]:
1ey4a_PU0_37-52
CI=2.08


[53-136 ]:
1ey4a_PU0_53-136
CI=2.65


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1ey4a_PU1_1-36
CI=2.82


[37-52]:
1ey4a_PU1_37-52
CI=2.08


[53-99]:
1ey4a_PU1_53-99
CI=2.33


[100-136 ]:
1ey4a_PU1_100-136
CI=1.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1ey4a_PU2_1-36
CI=2.82


[37-52]:
1ey4a_PU2_37-52
CI=2.08


[53-70]:
1ey4a_PU2_53-70
CI=0.10


[71-99]:
1ey4a_PU2_71-99
CI=1.50


[100-136 ]:
1ey4a_PU2_100-136
CI=1.64


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-36]:
1ey4a_PU_1-36
CI=2.82


[37-52]:
1ey4a_PU_37-52
CI=2.08


[53-70]:
1ey4a_PU_53-70
CI=0.10


[71-99]:
1ey4a_PU_71-99
CI=1.50


[100-120]:
1ey4a_PU_100-120
CI=0.27


[121-136 ]:
1ey4a_PU_121-136
CI=0.45