Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1eyva_PU0_1-27
CI=0.76


[28-43]:
1eyva_PU0_28-43
CI=1.13


[44-131 ]:
1eyva_PU0_44-131
CI=1.85


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1eyva_PU1_1-27
CI=0.76


[28-43]:
1eyva_PU1_28-43
CI=1.13


[44-77]:
1eyva_PU1_44-77
CI=0.33


[78-131 ]:
1eyva_PU1_78-131
CI=1.80


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-27]:
1eyva_PU_1-27
CI=0.76


[28-43]:
1eyva_PU_28-43
CI=1.13


[44-77]:
1eyva_PU_44-77
CI=0.33


[78-103]:
1eyva_PU_78-103
CI=0.43


[104-131 ]:
1eyva_PU_104-131
CI=1.41