Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-68]:
1ez3a_PU0_1-68
CI=0.98


[69-97]:
1ez3a_PU0_69-97
CI=0.69


[98-124 ]:
1ez3a_PU0_98-124
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-25]:
1ez3a_PU_1-25
CI=0.00


[26-55]:
1ez3a_PU_26-55
CI=0.68


[56-68]:
1ez3a_PU_56-68
CI=0.00


[69-97]:
1ez3a_PU_69-97
CI=0.69


[98-124 ]:
1ez3a_PU_98-124
CI=0.00