Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-145]:
1f1ua_PU0_1-145
CI=4.63


[146-310]:
1f1ua_PU0_146-310
CI=4.80


[311-322 ]:
1f1ua_PU0_311-322
CI=0.46


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU1_1-18
CI=0.00


[19-70]:
1f1ua_PU1_19-70
CI=3.77


[71-145]:
1f1ua_PU1_71-145
CI=3.02


[146-310]:
1f1ua_PU1_146-310
CI=4.80


[311-322 ]:
1f1ua_PU1_311-322
CI=0.46


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU2_1-18
CI=0.00


[19-70]:
1f1ua_PU2_19-70
CI=3.77


[71-129]:
1f1ua_PU2_71-129
CI=3.49


[130-145]:
1f1ua_PU2_130-145
CI=0.00


[146-310]:
1f1ua_PU2_146-310
CI=4.80


[311-322 ]:
1f1ua_PU2_311-322
CI=0.46


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU3_1-18
CI=0.00


[19-70]:
1f1ua_PU3_19-70
CI=3.77


[71-129]:
1f1ua_PU3_71-129
CI=3.49


[130-145]:
1f1ua_PU3_130-145
CI=0.00


[146-224]:
1f1ua_PU3_146-224
CI=4.32


[225-240]:
1f1ua_PU3_225-240
CI=0.90


[241-310]:
1f1ua_PU3_241-310
CI=2.49


[311-322 ]:
1f1ua_PU3_311-322
CI=0.46


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU4_1-18
CI=0.00


[19-70]:
1f1ua_PU4_19-70
CI=3.77


[71-129]:
1f1ua_PU4_71-129
CI=3.49


[130-145]:
1f1ua_PU4_130-145
CI=0.00


[146-161]:
1f1ua_PU4_146-161
CI=0.00


[162-204]:
1f1ua_PU4_162-204
CI=3.33


[205-224]:
1f1ua_PU4_205-224
CI=0.09


[225-240]:
1f1ua_PU4_225-240
CI=0.90


[241-310]:
1f1ua_PU4_241-310
CI=2.49


[311-322 ]:
1f1ua_PU4_311-322
CI=0.46


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU5_1-18
CI=0.00


[19-70]:
1f1ua_PU5_19-70
CI=3.77


[71-129]:
1f1ua_PU5_71-129
CI=3.49


[130-145]:
1f1ua_PU5_130-145
CI=0.00


[146-161]:
1f1ua_PU5_146-161
CI=0.00


[162-204]:
1f1ua_PU5_162-204
CI=3.33


[205-224]:
1f1ua_PU5_205-224
CI=0.09


[225-240]:
1f1ua_PU5_225-240
CI=0.90


[241-269]:
1f1ua_PU5_241-269
CI=3.21


[270-285]:
1f1ua_PU5_270-285
CI=0.00


[286-310]:
1f1ua_PU5_286-310
CI=0.15


[311-322 ]:
1f1ua_PU5_311-322
CI=0.46


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU6_1-18
CI=0.00


[19-70]:
1f1ua_PU6_19-70
CI=3.77


[71-86]:
1f1ua_PU6_71-86
CI=0.12


[87-102]:
1f1ua_PU6_87-102
CI=0.45


[103-129]:
1f1ua_PU6_103-129
CI=2.94


[130-145]:
1f1ua_PU6_130-145
CI=0.00


[146-161]:
1f1ua_PU6_146-161
CI=0.00


[162-204]:
1f1ua_PU6_162-204
CI=3.33


[205-224]:
1f1ua_PU6_205-224
CI=0.09


[225-240]:
1f1ua_PU6_225-240
CI=0.90


[241-269]:
1f1ua_PU6_241-269
CI=3.21


[270-285]:
1f1ua_PU6_270-285
CI=0.00


[286-310]:
1f1ua_PU6_286-310
CI=0.15


[311-322 ]:
1f1ua_PU6_311-322
CI=0.46


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU7_1-18
CI=0.00


[19-39]:
1f1ua_PU7_19-39
CI=0.17


[40-70]:
1f1ua_PU7_40-70
CI=3.15


[71-86]:
1f1ua_PU7_71-86
CI=0.12


[87-102]:
1f1ua_PU7_87-102
CI=0.45


[103-129]:
1f1ua_PU7_103-129
CI=2.94


[130-145]:
1f1ua_PU7_130-145
CI=0.00


[146-161]:
1f1ua_PU7_146-161
CI=0.00


[162-204]:
1f1ua_PU7_162-204
CI=3.33


[205-224]:
1f1ua_PU7_205-224
CI=0.09


[225-240]:
1f1ua_PU7_225-240
CI=0.90


[241-269]:
1f1ua_PU7_241-269
CI=3.21


[270-285]:
1f1ua_PU7_270-285
CI=0.00


[286-310]:
1f1ua_PU7_286-310
CI=0.15


[311-322 ]:
1f1ua_PU7_311-322
CI=0.46


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1f1ua_PU_1-18
CI=0.00


[19-39]:
1f1ua_PU_19-39
CI=0.17


[40-70]:
1f1ua_PU_40-70
CI=3.15


[71-86]:
1f1ua_PU_71-86
CI=0.12


[87-102]:
1f1ua_PU_87-102
CI=0.45


[103-129]:
1f1ua_PU_103-129
CI=2.94


[130-145]:
1f1ua_PU_130-145
CI=0.00


[146-161]:
1f1ua_PU_146-161
CI=0.00


[162-180]:
1f1ua_PU_162-180
CI=0.27


[181-204]:
1f1ua_PU_181-204
CI=2.12


[205-224]:
1f1ua_PU_205-224
CI=0.09


[225-240]:
1f1ua_PU_225-240
CI=0.90


[241-269]:
1f1ua_PU_241-269
CI=3.21


[270-285]:
1f1ua_PU_270-285
CI=0.00


[286-310]:
1f1ua_PU_286-310
CI=0.15


[311-322 ]:
1f1ua_PU_311-322
CI=0.46