Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1f2da_PU0_1-65
CI=2.64


[66-164]:
1f2da_PU0_66-164
CI=3.79


[165-341 ]:
1f2da_PU0_165-341
CI=4.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU1_1-16
CI=0.00


[17-40]:
1f2da_PU1_17-40
CI=2.28


[41-65]:
1f2da_PU1_41-65
CI=0.66


[66-164]:
1f2da_PU1_66-164
CI=3.79


[165-341 ]:
1f2da_PU1_165-341
CI=4.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU2_1-16
CI=0.00


[17-40]:
1f2da_PU2_17-40
CI=2.28


[41-65]:
1f2da_PU2_41-65
CI=0.66


[66-164]:
1f2da_PU2_66-164
CI=3.79


[165-262]:
1f2da_PU2_165-262
CI=4.05


[263-341 ]:
1f2da_PU2_263-341
CI=1.92


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU3_1-16
CI=0.00


[17-40]:
1f2da_PU3_17-40
CI=2.28


[41-65]:
1f2da_PU3_41-65
CI=0.66


[66-164]:
1f2da_PU3_66-164
CI=3.79


[165-262]:
1f2da_PU3_165-262
CI=4.05


[263-300]:
1f2da_PU3_263-300
CI=2.00


[301-321]:
1f2da_PU3_301-321
CI=0.17


[322-341 ]:
1f2da_PU3_322-341
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU4_1-16
CI=0.00


[17-40]:
1f2da_PU4_17-40
CI=2.28


[41-65]:
1f2da_PU4_41-65
CI=0.66


[66-103]:
1f2da_PU4_66-103
CI=3.11


[104-124]:
1f2da_PU4_104-124
CI=0.26


[125-164]:
1f2da_PU4_125-164
CI=0.56


[165-262]:
1f2da_PU4_165-262
CI=4.05


[263-300]:
1f2da_PU4_263-300
CI=2.00


[301-321]:
1f2da_PU4_301-321
CI=0.17


[322-341 ]:
1f2da_PU4_322-341
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU5_1-16
CI=0.00


[17-40]:
1f2da_PU5_17-40
CI=2.28


[41-65]:
1f2da_PU5_41-65
CI=0.66


[66-103]:
1f2da_PU5_66-103
CI=3.11


[104-124]:
1f2da_PU5_104-124
CI=0.26


[125-141]:
1f2da_PU5_125-141
CI=0.00


[142-164]:
1f2da_PU5_142-164
CI=0.56


[165-262]:
1f2da_PU5_165-262
CI=4.05


[263-300]:
1f2da_PU5_263-300
CI=2.00


[301-321]:
1f2da_PU5_301-321
CI=0.17


[322-341 ]:
1f2da_PU5_322-341
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU6_1-16
CI=0.00


[17-40]:
1f2da_PU6_17-40
CI=2.28


[41-65]:
1f2da_PU6_41-65
CI=0.66


[66-103]:
1f2da_PU6_66-103
CI=3.11


[104-124]:
1f2da_PU6_104-124
CI=0.26


[125-141]:
1f2da_PU6_125-141
CI=0.00


[142-164]:
1f2da_PU6_142-164
CI=0.56


[165-180]:
1f2da_PU6_165-180
CI=0.23


[181-199]:
1f2da_PU6_181-199
CI=0.20


[200-262]:
1f2da_PU6_200-262
CI=3.12


[263-300]:
1f2da_PU6_263-300
CI=2.00


[301-321]:
1f2da_PU6_301-321
CI=0.17


[322-341 ]:
1f2da_PU6_322-341
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU7_1-16
CI=0.00


[17-40]:
1f2da_PU7_17-40
CI=2.28


[41-65]:
1f2da_PU7_41-65
CI=0.66


[66-103]:
1f2da_PU7_66-103
CI=3.11


[104-124]:
1f2da_PU7_104-124
CI=0.26


[125-141]:
1f2da_PU7_125-141
CI=0.00


[142-164]:
1f2da_PU7_142-164
CI=0.56


[165-180]:
1f2da_PU7_165-180
CI=0.23


[181-199]:
1f2da_PU7_181-199
CI=0.20


[200-262]:
1f2da_PU7_200-262
CI=3.12


[263-279]:
1f2da_PU7_263-279
CI=0.43


[280-300]:
1f2da_PU7_280-300
CI=1.14


[301-321]:
1f2da_PU7_301-321
CI=0.17


[322-341 ]:
1f2da_PU7_322-341
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU8_1-16
CI=0.00


[17-40]:
1f2da_PU8_17-40
CI=2.28


[41-65]:
1f2da_PU8_41-65
CI=0.66


[66-103]:
1f2da_PU8_66-103
CI=3.11


[104-124]:
1f2da_PU8_104-124
CI=0.26


[125-141]:
1f2da_PU8_125-141
CI=0.00


[142-164]:
1f2da_PU8_142-164
CI=0.56


[165-180]:
1f2da_PU8_165-180
CI=0.23


[181-199]:
1f2da_PU8_181-199
CI=0.20


[200-238]:
1f2da_PU8_200-238
CI=1.52


[239-262]:
1f2da_PU8_239-262
CI=0.92


[263-279]:
1f2da_PU8_263-279
CI=0.43


[280-300]:
1f2da_PU8_280-300
CI=1.14


[301-321]:
1f2da_PU8_301-321
CI=0.17


[322-341 ]:
1f2da_PU8_322-341
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU9_1-16
CI=0.00


[17-40]:
1f2da_PU9_17-40
CI=2.28


[41-65]:
1f2da_PU9_41-65
CI=0.66


[66-103]:
1f2da_PU9_66-103
CI=3.11


[104-124]:
1f2da_PU9_104-124
CI=0.26


[125-141]:
1f2da_PU9_125-141
CI=0.00


[142-164]:
1f2da_PU9_142-164
CI=0.56


[165-180]:
1f2da_PU9_165-180
CI=0.23


[181-199]:
1f2da_PU9_181-199
CI=0.20


[200-217]:
1f2da_PU9_200-217
CI=0.10


[218-238]:
1f2da_PU9_218-238
CI=0.18


[239-262]:
1f2da_PU9_239-262
CI=0.92


[263-279]:
1f2da_PU9_263-279
CI=0.43


[280-300]:
1f2da_PU9_280-300
CI=1.14


[301-321]:
1f2da_PU9_301-321
CI=0.17


[322-341 ]:
1f2da_PU9_322-341
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f2da_PU_1-16
CI=0.00


[17-40]:
1f2da_PU_17-40
CI=2.28


[41-65]:
1f2da_PU_41-65
CI=0.66


[66-84]:
1f2da_PU_66-84
CI=0.86


[85-103]:
1f2da_PU_85-103
CI=0.39


[104-124]:
1f2da_PU_104-124
CI=0.26


[125-141]:
1f2da_PU_125-141
CI=0.00


[142-164]:
1f2da_PU_142-164
CI=0.56


[165-180]:
1f2da_PU_165-180
CI=0.23


[181-199]:
1f2da_PU_181-199
CI=0.20


[200-217]:
1f2da_PU_200-217
CI=0.10


[218-238]:
1f2da_PU_218-238
CI=0.18


[239-262]:
1f2da_PU_239-262
CI=0.92


[263-279]:
1f2da_PU_263-279
CI=0.43


[280-300]:
1f2da_PU_280-300
CI=1.14


[301-321]:
1f2da_PU_301-321
CI=0.17


[322-341 ]:
1f2da_PU_322-341
CI=0.00