Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-123]:
1f2tb_PU0_1-123
CI=3.52


[124-145 ]:
1f2tb_PU0_124-145
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1f2tb_PU1_1-21
CI=2.32


[22-37]:
1f2tb_PU1_22-37
CI=0.23


[38-123]:
1f2tb_PU1_38-123
CI=2.95


[124-145 ]:
1f2tb_PU1_124-145
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1f2tb_PU2_1-21
CI=2.32


[22-37]:
1f2tb_PU2_22-37
CI=0.23


[38-56]:
1f2tb_PU2_38-56
CI=0.29


[57-111]:
1f2tb_PU2_57-111
CI=3.37


[112-123]:
1f2tb_PU2_112-123
CI=0.00


[124-145 ]:
1f2tb_PU2_124-145
CI=0.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1f2tb_PU_1-21
CI=2.32


[22-37]:
1f2tb_PU_22-37
CI=0.23


[38-56]:
1f2tb_PU_38-56
CI=0.29


[57-91]:
1f2tb_PU_57-91
CI=2.35


[92-111]:
1f2tb_PU_92-111
CI=2.33


[112-123]:
1f2tb_PU_112-123
CI=0.00


[124-145 ]:
1f2tb_PU_124-145
CI=0.08