Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1f32a_PU0_1-41
CI=2.55


[42-60]:
1f32a_PU0_42-60
CI=1.17


[61-127 ]:
1f32a_PU0_61-127
CI=2.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1f32a_PU1_1-41
CI=2.55


[42-60]:
1f32a_PU1_42-60
CI=1.17


[61-95]:
1f32a_PU1_61-95
CI=2.40


[96-127 ]:
1f32a_PU1_96-127
CI=1.24


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-22]:
1f32a_PU_1-22
CI=1.12


[23-41]:
1f32a_PU_23-41
CI=0.47


[42-60]:
1f32a_PU_42-60
CI=1.17


[61-95]:
1f32a_PU_61-95
CI=2.40


[96-127 ]:
1f32a_PU_96-127
CI=1.24