Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1f39a_PU0_1-37
CI=3.31


[38-89]:
1f39a_PU0_38-89
CI=4.26


[90-101 ]:
1f39a_PU0_90-101
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1f39a_PU1_1-37
CI=3.31


[38-61]:
1f39a_PU1_38-61
CI=2.76


[62-89]:
1f39a_PU1_62-89
CI=1.36


[90-101 ]:
1f39a_PU1_90-101
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1f39a_PU_1-17
CI=0.00


[18-37]:
1f39a_PU_18-37
CI=0.18


[38-61]:
1f39a_PU_38-61
CI=2.76


[62-89]:
1f39a_PU_62-89
CI=1.36


[90-101 ]:
1f39a_PU_90-101
CI=0.00