Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1f3ua_PU0_1-22
CI=0.08


[23-84]:
1f3ua_PU0_23-84
CI=2.02


[85-118 ]:
1f3ua_PU0_85-118
CI=1.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1f3ua_PU1_1-22
CI=0.08


[23-38]:
1f3ua_PU1_23-38
CI=0.00


[39-56]:
1f3ua_PU1_39-56
CI=2.18


[57-84]:
1f3ua_PU1_57-84
CI=0.59


[85-118 ]:
1f3ua_PU1_85-118
CI=1.96


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-22]:
1f3ua_PU_1-22
CI=0.08


[23-38]:
1f3ua_PU_23-38
CI=0.00


[39-56]:
1f3ua_PU_39-56
CI=2.18


[57-84]:
1f3ua_PU_57-84
CI=0.59


[85-102]:
1f3ua_PU_85-102
CI=0.10


[103-118 ]:
1f3ua_PU_103-118
CI=0.00