Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1f6ba_PU0_1-72
CI=2.49


[73-176 ]:
1f6ba_PU0_73-176
CI=3.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-72]:
1f6ba_PU1_1-72
CI=2.49


[73-88]:
1f6ba_PU1_73-88
CI=0.21


[89-104]:
1f6ba_PU1_89-104
CI=0.34


[105-176 ]:
1f6ba_PU1_105-176
CI=3.07


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1f6ba_PU2_1-72
CI=2.49


[73-88]:
1f6ba_PU2_73-88
CI=0.21


[89-104]:
1f6ba_PU2_89-104
CI=0.34


[105-122]:
1f6ba_PU2_105-122
CI=0.41


[123-151]:
1f6ba_PU2_123-151
CI=0.90


[152-176 ]:
1f6ba_PU2_152-176
CI=1.35


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1f6ba_PU_1-21
CI=0.09


[22-41]:
1f6ba_PU_22-41
CI=0.27


[42-72]:
1f6ba_PU_42-72
CI=1.18


[73-88]:
1f6ba_PU_73-88
CI=0.21


[89-104]:
1f6ba_PU_89-104
CI=0.34


[105-122]:
1f6ba_PU_105-122
CI=0.41


[123-151]:
1f6ba_PU_123-151
CI=0.90


[152-176 ]:
1f6ba_PU_152-176
CI=1.35