Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU0_1-79
CI=3.01


[80-186]:
1f74a_PU0_80-186
CI=2.53


[187-293 ]:
1f74a_PU0_187-293
CI=2.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU1_1-79
CI=3.01


[80-186]:
1f74a_PU1_80-186
CI=2.53


[187-240]:
1f74a_PU1_187-240
CI=2.05


[241-293 ]:
1f74a_PU1_241-293
CI=1.94


Level 2
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU2_1-79
CI=3.01


[80-131]:
1f74a_PU2_80-131
CI=1.84


[132-186]:
1f74a_PU2_132-186
CI=1.89


[187-240]:
1f74a_PU2_187-240
CI=2.05


[241-293 ]:
1f74a_PU2_241-293
CI=1.94


Level 3
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU3_1-79
CI=3.01


[80-131]:
1f74a_PU3_80-131
CI=1.84


[132-186]:
1f74a_PU3_132-186
CI=1.89


[187-211]:
1f74a_PU3_187-211
CI=1.41


[212-240]:
1f74a_PU3_212-240
CI=1.04


[241-293 ]:
1f74a_PU3_241-293
CI=1.94


Level 4
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU4_1-79
CI=3.01


[80-112]:
1f74a_PU4_80-112
CI=1.78


[113-131]:
1f74a_PU4_113-131
CI=0.00


[132-186]:
1f74a_PU4_132-186
CI=1.89


[187-211]:
1f74a_PU4_187-211
CI=1.41


[212-240]:
1f74a_PU4_212-240
CI=1.04


[241-293 ]:
1f74a_PU4_241-293
CI=1.94


Level 5
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU5_1-79
CI=3.01


[80-112]:
1f74a_PU5_80-112
CI=1.78


[113-131]:
1f74a_PU5_113-131
CI=0.00


[132-164]:
1f74a_PU5_132-164
CI=1.51


[165-186]:
1f74a_PU5_165-186
CI=0.33


[187-211]:
1f74a_PU5_187-211
CI=1.41


[212-240]:
1f74a_PU5_212-240
CI=1.04


[241-293 ]:
1f74a_PU5_241-293
CI=1.94


Level 6
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU6_1-79
CI=3.01


[80-112]:
1f74a_PU6_80-112
CI=1.78


[113-131]:
1f74a_PU6_113-131
CI=0.00


[132-164]:
1f74a_PU6_132-164
CI=1.51


[165-186]:
1f74a_PU6_165-186
CI=0.33


[187-211]:
1f74a_PU6_187-211
CI=1.41


[212-240]:
1f74a_PU6_212-240
CI=1.04


[241-275]:
1f74a_PU6_241-275
CI=1.35


[276-293 ]:
1f74a_PU6_276-293
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-79]:
1f74a_PU7_1-79
CI=3.01


[80-112]:
1f74a_PU7_80-112
CI=1.78


[113-131]:
1f74a_PU7_113-131
CI=0.00


[132-164]:
1f74a_PU7_132-164
CI=1.51


[165-186]:
1f74a_PU7_165-186
CI=0.33


[187-211]:
1f74a_PU7_187-211
CI=1.41


[212-240]:
1f74a_PU7_212-240
CI=1.04


[241-257]:
1f74a_PU7_241-257
CI=0.43


[258-275]:
1f74a_PU7_258-275
CI=0.83


[276-293 ]:
1f74a_PU7_276-293
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-43]:
1f74a_PU8_1-43
CI=1.95


[44-79]:
1f74a_PU8_44-79
CI=1.14


[80-112]:
1f74a_PU8_80-112
CI=1.78


[113-131]:
1f74a_PU8_113-131
CI=0.00


[132-164]:
1f74a_PU8_132-164
CI=1.51


[165-186]:
1f74a_PU8_165-186
CI=0.33


[187-211]:
1f74a_PU8_187-211
CI=1.41


[212-240]:
1f74a_PU8_212-240
CI=1.04


[241-257]:
1f74a_PU8_241-257
CI=0.43


[258-275]:
1f74a_PU8_258-275
CI=0.83


[276-293 ]:
1f74a_PU8_276-293
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-43]:
1f74a_PU9_1-43
CI=1.95


[44-62]:
1f74a_PU9_44-62
CI=0.76


[63-79]:
1f74a_PU9_63-79
CI=0.20


[80-112]:
1f74a_PU9_80-112
CI=1.78


[113-131]:
1f74a_PU9_113-131
CI=0.00


[132-164]:
1f74a_PU9_132-164
CI=1.51


[165-186]:
1f74a_PU9_165-186
CI=0.33


[187-211]:
1f74a_PU9_187-211
CI=1.41


[212-240]:
1f74a_PU9_212-240
CI=1.04


[241-257]:
1f74a_PU9_241-257
CI=0.43


[258-275]:
1f74a_PU9_258-275
CI=0.83


[276-293 ]:
1f74a_PU9_276-293
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-26]:
1f74a_PU10_1-26
CI=1.08


[27-43]:
1f74a_PU10_27-43
CI=0.42


[44-62]:
1f74a_PU10_44-62
CI=0.76


[63-79]:
1f74a_PU10_63-79
CI=0.20


[80-112]:
1f74a_PU10_80-112
CI=1.78


[113-131]:
1f74a_PU10_113-131
CI=0.00


[132-164]:
1f74a_PU10_132-164
CI=1.51


[165-186]:
1f74a_PU10_165-186
CI=0.33


[187-211]:
1f74a_PU10_187-211
CI=1.41


[212-240]:
1f74a_PU10_212-240
CI=1.04


[241-257]:
1f74a_PU10_241-257
CI=0.43


[258-275]:
1f74a_PU10_258-275
CI=0.83


[276-293 ]:
1f74a_PU10_276-293
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-26]:
1f74a_PU_1-26
CI=1.08


[27-43]:
1f74a_PU_27-43
CI=0.42


[44-62]:
1f74a_PU_44-62
CI=0.76


[63-79]:
1f74a_PU_63-79
CI=0.20


[80-112]:
1f74a_PU_80-112
CI=1.78


[113-131]:
1f74a_PU_113-131
CI=0.00


[132-148]:
1f74a_PU_132-148
CI=0.21


[149-164]:
1f74a_PU_149-164
CI=0.34


[165-186]:
1f74a_PU_165-186
CI=0.33


[187-211]:
1f74a_PU_187-211
CI=1.41


[212-240]:
1f74a_PU_212-240
CI=1.04


[241-257]:
1f74a_PU_241-257
CI=0.43


[258-275]:
1f74a_PU_258-275
CI=0.83


[276-293 ]:
1f74a_PU_276-293
CI=0.00