Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f7da_PU0_1-16
CI=0.00


[17-106]:
1f7da_PU0_17-106
CI=5.49


[107-118 ]:
1f7da_PU0_107-118
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f7da_PU1_1-16
CI=0.00


[17-42]:
1f7da_PU1_17-42
CI=1.45


[43-75]:
1f7da_PU1_43-75
CI=2.12


[76-106]:
1f7da_PU1_76-106
CI=0.35


[107-118 ]:
1f7da_PU1_107-118
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f7da_PU_1-16
CI=0.00


[17-42]:
1f7da_PU_17-42
CI=1.45


[43-59]:
1f7da_PU_43-59
CI=0.10


[60-75]:
1f7da_PU_60-75
CI=0.00


[76-106]:
1f7da_PU_76-106
CI=0.35


[107-118 ]:
1f7da_PU_107-118
CI=0.00