Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f7la_PU0_1-16
CI=0.00


[17-50]:
1f7la_PU0_17-50
CI=0.88


[51-118 ]:
1f7la_PU0_51-118
CI=3.76


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f7la_PU_1-16
CI=0.00


[17-50]:
1f7la_PU_17-50
CI=0.88


[51-76]:
1f7la_PU_51-76
CI=1.01


[77-100]:
1f7la_PU_77-100
CI=2.67


[101-118 ]:
1f7la_PU_101-118
CI=1.86