Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1f7sa_PU0_1-55
CI=2.97


[56-124 ]:
1f7sa_PU0_56-124
CI=3.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1f7sa_PU1_1-22
CI=0.09


[23-55]:
1f7sa_PU1_23-55
CI=2.78


[56-124 ]:
1f7sa_PU1_56-124
CI=3.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1f7sa_PU2_1-22
CI=0.09


[23-55]:
1f7sa_PU2_23-55
CI=2.78


[56-86]:
1f7sa_PU2_56-86
CI=2.83


[87-124 ]:
1f7sa_PU2_87-124
CI=0.89


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1f7sa_PU_1-22
CI=0.09


[23-55]:
1f7sa_PU_23-55
CI=2.78


[56-86]:
1f7sa_PU_56-86
CI=2.83


[87-103]:
1f7sa_PU_87-103
CI=0.42


[104-124 ]:
1f7sa_PU_104-124
CI=0.09