Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1f86a_PU0_1-64
CI=4.16


[65-80]:
1f86a_PU0_65-80
CI=1.26


[81-115 ]:
1f86a_PU0_81-115
CI=2.07


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1f86a_PU_1-18
CI=0.93


[19-38]:
1f86a_PU_19-38
CI=2.54


[39-64]:
1f86a_PU_39-64
CI=0.22


[65-80]:
1f86a_PU_65-80
CI=1.26


[81-115 ]:
1f86a_PU_81-115
CI=2.07