Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-97]:
1f8ea_PU0_1-97
CI=3.29


[98-327]:
1f8ea_PU0_98-327
CI=6.91


[328-388 ]:
1f8ea_PU0_328-388
CI=2.43


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU1_1-20
CI=0.00


[21-97]:
1f8ea_PU1_21-97
CI=4.08


[98-327]:
1f8ea_PU1_98-327
CI=6.91


[328-388 ]:
1f8ea_PU1_328-388
CI=2.43


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU2_1-20
CI=0.00


[21-97]:
1f8ea_PU2_21-97
CI=4.08


[98-187]:
1f8ea_PU2_98-187
CI=5.23


[188-327]:
1f8ea_PU2_188-327
CI=6.76


[328-388 ]:
1f8ea_PU2_328-388
CI=2.43


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU3_1-20
CI=0.00


[21-97]:
1f8ea_PU3_21-97
CI=4.08


[98-187]:
1f8ea_PU3_98-187
CI=5.23


[188-327]:
1f8ea_PU3_188-327
CI=6.76


[328-368]:
1f8ea_PU3_328-368
CI=2.95


[369-388 ]:
1f8ea_PU3_369-388
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU4_1-20
CI=0.00


[21-97]:
1f8ea_PU4_21-97
CI=4.08


[98-187]:
1f8ea_PU4_98-187
CI=5.23


[188-269]:
1f8ea_PU4_188-269
CI=5.51


[270-327]:
1f8ea_PU4_270-327
CI=4.68


[328-368]:
1f8ea_PU4_328-368
CI=2.95


[369-388 ]:
1f8ea_PU4_369-388
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU5_1-20
CI=0.00


[21-54]:
1f8ea_PU5_21-54
CI=1.69


[55-74]:
1f8ea_PU5_55-74
CI=0.93


[75-97]:
1f8ea_PU5_75-97
CI=2.47


[98-187]:
1f8ea_PU5_98-187
CI=5.23


[188-269]:
1f8ea_PU5_188-269
CI=5.51


[270-327]:
1f8ea_PU5_270-327
CI=4.68


[328-368]:
1f8ea_PU5_328-368
CI=2.95


[369-388 ]:
1f8ea_PU5_369-388
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU6_1-20
CI=0.00


[21-37]:
1f8ea_PU6_21-37
CI=0.32


[38-54]:
1f8ea_PU6_38-54
CI=2.08


[55-74]:
1f8ea_PU6_55-74
CI=0.93


[75-97]:
1f8ea_PU6_75-97
CI=2.47


[98-187]:
1f8ea_PU6_98-187
CI=5.23


[188-269]:
1f8ea_PU6_188-269
CI=5.51


[270-327]:
1f8ea_PU6_270-327
CI=4.68


[328-368]:
1f8ea_PU6_328-368
CI=2.95


[369-388 ]:
1f8ea_PU6_369-388
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU7_1-20
CI=0.00


[21-37]:
1f8ea_PU7_21-37
CI=0.32


[38-54]:
1f8ea_PU7_38-54
CI=2.08


[55-74]:
1f8ea_PU7_55-74
CI=0.93


[75-97]:
1f8ea_PU7_75-97
CI=2.47


[98-150]:
1f8ea_PU7_98-150
CI=4.41


[151-187]:
1f8ea_PU7_151-187
CI=3.11


[188-269]:
1f8ea_PU7_188-269
CI=5.51


[270-327]:
1f8ea_PU7_270-327
CI=4.68


[328-368]:
1f8ea_PU7_328-368
CI=2.95


[369-388 ]:
1f8ea_PU7_369-388
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU8_1-20
CI=0.00


[21-37]:
1f8ea_PU8_21-37
CI=0.32


[38-54]:
1f8ea_PU8_38-54
CI=2.08


[55-74]:
1f8ea_PU8_55-74
CI=0.93


[75-97]:
1f8ea_PU8_75-97
CI=2.47


[98-150]:
1f8ea_PU8_98-150
CI=4.41


[151-187]:
1f8ea_PU8_151-187
CI=3.11


[188-236]:
1f8ea_PU8_188-236
CI=4.36


[237-269]:
1f8ea_PU8_237-269
CI=2.24


[270-327]:
1f8ea_PU8_270-327
CI=4.68


[328-368]:
1f8ea_PU8_328-368
CI=2.95


[369-388 ]:
1f8ea_PU8_369-388
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU9_1-20
CI=0.00


[21-37]:
1f8ea_PU9_21-37
CI=0.32


[38-54]:
1f8ea_PU9_38-54
CI=2.08


[55-74]:
1f8ea_PU9_55-74
CI=0.93


[75-97]:
1f8ea_PU9_75-97
CI=2.47


[98-150]:
1f8ea_PU9_98-150
CI=4.41


[151-187]:
1f8ea_PU9_151-187
CI=3.11


[188-236]:
1f8ea_PU9_188-236
CI=4.36


[237-269]:
1f8ea_PU9_237-269
CI=2.24


[270-327]:
1f8ea_PU9_270-327
CI=4.68


[328-348]:
1f8ea_PU9_328-348
CI=1.42


[349-368]:
1f8ea_PU9_349-368
CI=1.02


[369-388 ]:
1f8ea_PU9_369-388
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU10_1-20
CI=0.00


[21-37]:
1f8ea_PU10_21-37
CI=0.32


[38-54]:
1f8ea_PU10_38-54
CI=2.08


[55-74]:
1f8ea_PU10_55-74
CI=0.93


[75-97]:
1f8ea_PU10_75-97
CI=2.47


[98-150]:
1f8ea_PU10_98-150
CI=4.41


[151-187]:
1f8ea_PU10_151-187
CI=3.11


[188-236]:
1f8ea_PU10_188-236
CI=4.36


[237-253]:
1f8ea_PU10_237-253
CI=1.20


[254-269]:
1f8ea_PU10_254-269
CI=0.12


[270-327]:
1f8ea_PU10_270-327
CI=4.68


[328-348]:
1f8ea_PU10_328-348
CI=1.42


[349-368]:
1f8ea_PU10_349-368
CI=1.02


[369-388 ]:
1f8ea_PU10_369-388
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU11_1-20
CI=0.00


[21-37]:
1f8ea_PU11_21-37
CI=0.32


[38-54]:
1f8ea_PU11_38-54
CI=2.08


[55-74]:
1f8ea_PU11_55-74
CI=0.93


[75-97]:
1f8ea_PU11_75-97
CI=2.47


[98-114]:
1f8ea_PU11_98-114
CI=2.30


[115-150]:
1f8ea_PU11_115-150
CI=2.49


[151-187]:
1f8ea_PU11_151-187
CI=3.11


[188-236]:
1f8ea_PU11_188-236
CI=4.36


[237-253]:
1f8ea_PU11_237-253
CI=1.20


[254-269]:
1f8ea_PU11_254-269
CI=0.12


[270-327]:
1f8ea_PU11_270-327
CI=4.68


[328-348]:
1f8ea_PU11_328-348
CI=1.42


[349-368]:
1f8ea_PU11_349-368
CI=1.02


[369-388 ]:
1f8ea_PU11_369-388
CI=0.00


Level 12
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU12_1-20
CI=0.00


[21-37]:
1f8ea_PU12_21-37
CI=0.32


[38-54]:
1f8ea_PU12_38-54
CI=2.08


[55-74]:
1f8ea_PU12_55-74
CI=0.93


[75-97]:
1f8ea_PU12_75-97
CI=2.47


[98-114]:
1f8ea_PU12_98-114
CI=2.30


[115-150]:
1f8ea_PU12_115-150
CI=2.49


[151-187]:
1f8ea_PU12_151-187
CI=3.11


[188-236]:
1f8ea_PU12_188-236
CI=4.36


[237-253]:
1f8ea_PU12_237-253
CI=1.20


[254-269]:
1f8ea_PU12_254-269
CI=0.12


[270-311]:
1f8ea_PU12_270-311
CI=3.87


[312-327]:
1f8ea_PU12_312-327
CI=0.00


[328-348]:
1f8ea_PU12_328-348
CI=1.42


[349-368]:
1f8ea_PU12_349-368
CI=1.02


[369-388 ]:
1f8ea_PU12_369-388
CI=0.00


Level 13
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU13_1-20
CI=0.00


[21-37]:
1f8ea_PU13_21-37
CI=0.32


[38-54]:
1f8ea_PU13_38-54
CI=2.08


[55-74]:
1f8ea_PU13_55-74
CI=0.93


[75-97]:
1f8ea_PU13_75-97
CI=2.47


[98-114]:
1f8ea_PU13_98-114
CI=2.30


[115-150]:
1f8ea_PU13_115-150
CI=2.49


[151-187]:
1f8ea_PU13_151-187
CI=3.11


[188-236]:
1f8ea_PU13_188-236
CI=4.36


[237-253]:
1f8ea_PU13_237-253
CI=1.20


[254-269]:
1f8ea_PU13_254-269
CI=0.12


[270-289]:
1f8ea_PU13_270-289
CI=1.40


[290-311]:
1f8ea_PU13_290-311
CI=1.53


[312-327]:
1f8ea_PU13_312-327
CI=0.00


[328-348]:
1f8ea_PU13_328-348
CI=1.42


[349-368]:
1f8ea_PU13_349-368
CI=1.02


[369-388 ]:
1f8ea_PU13_369-388
CI=0.00


Level 14
PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU14_1-20
CI=0.00


[21-37]:
1f8ea_PU14_21-37
CI=0.32


[38-54]:
1f8ea_PU14_38-54
CI=2.08


[55-74]:
1f8ea_PU14_55-74
CI=0.93


[75-97]:
1f8ea_PU14_75-97
CI=2.47


[98-114]:
1f8ea_PU14_98-114
CI=2.30


[115-150]:
1f8ea_PU14_115-150
CI=2.49


[151-168]:
1f8ea_PU14_151-168
CI=0.41


[169-187]:
1f8ea_PU14_169-187
CI=1.87


[188-236]:
1f8ea_PU14_188-236
CI=4.36


[237-253]:
1f8ea_PU14_237-253
CI=1.20


[254-269]:
1f8ea_PU14_254-269
CI=0.12


[270-289]:
1f8ea_PU14_270-289
CI=1.40


[290-311]:
1f8ea_PU14_290-311
CI=1.53


[312-327]:
1f8ea_PU14_312-327
CI=0.00


[328-348]:
1f8ea_PU14_328-348
CI=1.42


[349-368]:
1f8ea_PU14_349-368
CI=1.02


[369-388 ]:
1f8ea_PU14_369-388
CI=0.00


Final level 15

PU
Molecule needs Java 1.4 Structure


[1-20]:
1f8ea_PU_1-20
CI=0.00


[21-37]:
1f8ea_PU_21-37
CI=0.32


[38-54]:
1f8ea_PU_38-54
CI=2.08


[55-74]:
1f8ea_PU_55-74
CI=0.93


[75-97]:
1f8ea_PU_75-97
CI=2.47


[98-114]:
1f8ea_PU_98-114
CI=2.30


[115-150]:
1f8ea_PU_115-150
CI=2.49


[151-168]:
1f8ea_PU_151-168
CI=0.41


[169-187]:
1f8ea_PU_169-187
CI=1.87


[188-219]:
1f8ea_PU_188-219
CI=2.20


[220-236]:
1f8ea_PU_220-236
CI=2.08


[237-253]:
1f8ea_PU_237-253
CI=1.20


[254-269]:
1f8ea_PU_254-269
CI=0.12


[270-289]:
1f8ea_PU_270-289
CI=1.40


[290-311]:
1f8ea_PU_290-311
CI=1.53


[312-327]:
1f8ea_PU_312-327
CI=0.00


[328-348]:
1f8ea_PU_328-348
CI=1.42


[349-368]:
1f8ea_PU_349-368
CI=1.02


[369-388 ]:
1f8ea_PU_369-388
CI=0.00