Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-66]:
1f9za_PU0_1-66
CI=3.83


[67-128 ]:
1f9za_PU0_67-128
CI=3.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-66]:
1f9za_PU1_1-66
CI=3.83


[67-82]:
1f9za_PU1_67-82
CI=0.00


[83-113]:
1f9za_PU1_83-113
CI=2.45


[114-128 ]:
1f9za_PU1_114-128
CI=0.37


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f9za_PU_1-16
CI=0.12


[17-46]:
1f9za_PU_17-46
CI=2.73


[47-66]:
1f9za_PU_47-66
CI=0.27


[67-82]:
1f9za_PU_67-82
CI=0.00


[83-113]:
1f9za_PU_83-113
CI=2.45


[114-128 ]:
1f9za_PU_114-128
CI=0.37