Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1fgya_PU0_1-52
CI=3.79


[53-110]:
1fgya_PU0_53-110
CI=3.46


[111-125 ]:
1fgya_PU0_111-125
CI=0.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1fgya_PU1_1-52
CI=3.79


[53-75]:
1fgya_PU1_53-75
CI=2.13


[76-110]:
1fgya_PU1_76-110
CI=1.92


[111-125 ]:
1fgya_PU1_111-125
CI=0.12


Level 2
PU
Molecule needs Java 1.4 Structure


[1-52]:
1fgya_PU2_1-52
CI=3.79


[53-75]:
1fgya_PU2_53-75
CI=2.13


[76-94]:
1fgya_PU2_76-94
CI=2.16


[95-110]:
1fgya_PU2_95-110
CI=0.23


[111-125 ]:
1fgya_PU2_111-125
CI=0.12


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1fgya_PU_1-30
CI=2.99


[31-52]:
1fgya_PU_31-52
CI=2.58


[53-75]:
1fgya_PU_53-75
CI=2.13


[76-94]:
1fgya_PU_76-94
CI=2.16


[95-110]:
1fgya_PU_95-110
CI=0.23


[111-125 ]:
1fgya_PU_111-125
CI=0.12