Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1fit0_PU0_1-29
CI=1.65


[30-104]:
1fit0_PU0_30-104
CI=3.77


[105-124 ]:
1fit0_PU0_105-124
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1fit0_PU1_1-29
CI=1.65


[30-48]:
1fit0_PU1_30-48
CI=0.00


[49-64]:
1fit0_PU1_49-64
CI=0.00


[65-104]:
1fit0_PU1_65-104
CI=2.86


[105-124 ]:
1fit0_PU1_105-124
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-29]:
1fit0_PU_1-29
CI=1.65


[30-48]:
1fit0_PU_30-48
CI=0.00


[49-64]:
1fit0_PU_49-64
CI=0.00


[65-81]:
1fit0_PU_65-81
CI=0.65


[82-104]:
1fit0_PU_82-104
CI=0.71


[105-124 ]:
1fit0_PU_105-124
CI=0.00