Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1fk5a_PU0_1-40
CI=1.84


[41-93 ]:
1fk5a_PU0_41-93
CI=1.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1fk5a_PU1_1-40
CI=1.84


[41-63]:
1fk5a_PU1_41-63
CI=0.00


[64-93 ]:
1fk5a_PU1_64-93
CI=0.68


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1fk5a_PU_1-24
CI=0.16


[25-40]:
1fk5a_PU_25-40
CI=0.00


[41-63]:
1fk5a_PU_41-63
CI=0.00


[64-93 ]:
1fk5a_PU_64-93
CI=0.68