Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU0_1-17
CI=0.00


[18-152]:
1fkna_PU0_18-152
CI=5.03


[153-391 ]:
1fkna_PU0_153-391
CI=5.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU1_1-17
CI=0.00


[18-152]:
1fkna_PU1_18-152
CI=5.03


[153-250]:
1fkna_PU1_153-250
CI=1.91


[251-287]:
1fkna_PU1_251-287
CI=1.02


[288-391 ]:
1fkna_PU1_288-391
CI=2.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU2_1-17
CI=0.00


[18-152]:
1fkna_PU2_18-152
CI=5.03


[153-196]:
1fkna_PU2_153-196
CI=1.70


[197-250]:
1fkna_PU2_197-250
CI=2.01


[251-287]:
1fkna_PU2_251-287
CI=1.02


[288-391 ]:
1fkna_PU2_288-391
CI=2.96


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU3_1-17
CI=0.00


[18-152]:
1fkna_PU3_18-152
CI=5.03


[153-196]:
1fkna_PU3_153-196
CI=1.70


[197-250]:
1fkna_PU3_197-250
CI=2.01


[251-287]:
1fkna_PU3_251-287
CI=1.02


[288-306]:
1fkna_PU3_288-306
CI=2.38


[307-343]:
1fkna_PU3_307-343
CI=1.50


[344-391 ]:
1fkna_PU3_344-391
CI=1.84


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU4_1-17
CI=0.00


[18-152]:
1fkna_PU4_18-152
CI=5.03


[153-196]:
1fkna_PU4_153-196
CI=1.70


[197-250]:
1fkna_PU4_197-250
CI=2.01


[251-287]:
1fkna_PU4_251-287
CI=1.02


[288-306]:
1fkna_PU4_288-306
CI=2.38


[307-343]:
1fkna_PU4_307-343
CI=1.50


[344-373]:
1fkna_PU4_344-373
CI=2.22


[374-391 ]:
1fkna_PU4_374-391
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU5_1-17
CI=0.00


[18-152]:
1fkna_PU5_18-152
CI=5.03


[153-196]:
1fkna_PU5_153-196
CI=1.70


[197-250]:
1fkna_PU5_197-250
CI=2.01


[251-287]:
1fkna_PU5_251-287
CI=1.02


[288-306]:
1fkna_PU5_288-306
CI=2.38


[307-327]:
1fkna_PU5_307-327
CI=1.43


[328-343]:
1fkna_PU5_328-343
CI=0.11


[344-373]:
1fkna_PU5_344-373
CI=2.22


[374-391 ]:
1fkna_PU5_374-391
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU6_1-17
CI=0.00


[18-152]:
1fkna_PU6_18-152
CI=5.03


[153-196]:
1fkna_PU6_153-196
CI=1.70


[197-233]:
1fkna_PU6_197-233
CI=2.26


[234-250]:
1fkna_PU6_234-250
CI=0.00


[251-287]:
1fkna_PU6_251-287
CI=1.02


[288-306]:
1fkna_PU6_288-306
CI=2.38


[307-327]:
1fkna_PU6_307-327
CI=1.43


[328-343]:
1fkna_PU6_328-343
CI=0.11


[344-373]:
1fkna_PU6_344-373
CI=2.22


[374-391 ]:
1fkna_PU6_374-391
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU7_1-17
CI=0.00


[18-126]:
1fkna_PU7_18-126
CI=4.85


[127-152]:
1fkna_PU7_127-152
CI=1.36


[153-196]:
1fkna_PU7_153-196
CI=1.70


[197-233]:
1fkna_PU7_197-233
CI=2.26


[234-250]:
1fkna_PU7_234-250
CI=0.00


[251-287]:
1fkna_PU7_251-287
CI=1.02


[288-306]:
1fkna_PU7_288-306
CI=2.38


[307-327]:
1fkna_PU7_307-327
CI=1.43


[328-343]:
1fkna_PU7_328-343
CI=0.11


[344-373]:
1fkna_PU7_344-373
CI=2.22


[374-391 ]:
1fkna_PU7_374-391
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU8_1-17
CI=0.00


[18-64]:
1fkna_PU8_18-64
CI=2.32


[65-114]:
1fkna_PU8_65-114
CI=3.71


[115-126]:
1fkna_PU8_115-126
CI=0.29


[127-152]:
1fkna_PU8_127-152
CI=1.36


[153-196]:
1fkna_PU8_153-196
CI=1.70


[197-233]:
1fkna_PU8_197-233
CI=2.26


[234-250]:
1fkna_PU8_234-250
CI=0.00


[251-287]:
1fkna_PU8_251-287
CI=1.02


[288-306]:
1fkna_PU8_288-306
CI=2.38


[307-327]:
1fkna_PU8_307-327
CI=1.43


[328-343]:
1fkna_PU8_328-343
CI=0.11


[344-373]:
1fkna_PU8_344-373
CI=2.22


[374-391 ]:
1fkna_PU8_374-391
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU9_1-17
CI=0.00


[18-46]:
1fkna_PU9_18-46
CI=1.97


[47-64]:
1fkna_PU9_47-64
CI=1.12


[65-114]:
1fkna_PU9_65-114
CI=3.71


[115-126]:
1fkna_PU9_115-126
CI=0.29


[127-152]:
1fkna_PU9_127-152
CI=1.36


[153-196]:
1fkna_PU9_153-196
CI=1.70


[197-233]:
1fkna_PU9_197-233
CI=2.26


[234-250]:
1fkna_PU9_234-250
CI=0.00


[251-287]:
1fkna_PU9_251-287
CI=1.02


[288-306]:
1fkna_PU9_288-306
CI=2.38


[307-327]:
1fkna_PU9_307-327
CI=1.43


[328-343]:
1fkna_PU9_328-343
CI=0.11


[344-373]:
1fkna_PU9_344-373
CI=2.22


[374-391 ]:
1fkna_PU9_374-391
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU10_1-17
CI=0.00


[18-46]:
1fkna_PU10_18-46
CI=1.97


[47-64]:
1fkna_PU10_47-64
CI=1.12


[65-114]:
1fkna_PU10_65-114
CI=3.71


[115-126]:
1fkna_PU10_115-126
CI=0.29


[127-152]:
1fkna_PU10_127-152
CI=1.36


[153-196]:
1fkna_PU10_153-196
CI=1.70


[197-233]:
1fkna_PU10_197-233
CI=2.26


[234-250]:
1fkna_PU10_234-250
CI=0.00


[251-271]:
1fkna_PU10_251-271
CI=0.26


[272-287]:
1fkna_PU10_272-287
CI=0.11


[288-306]:
1fkna_PU10_288-306
CI=2.38


[307-327]:
1fkna_PU10_307-327
CI=1.43


[328-343]:
1fkna_PU10_328-343
CI=0.11


[344-373]:
1fkna_PU10_344-373
CI=2.22


[374-391 ]:
1fkna_PU10_374-391
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU11_1-17
CI=0.00


[18-46]:
1fkna_PU11_18-46
CI=1.97


[47-64]:
1fkna_PU11_47-64
CI=1.12


[65-114]:
1fkna_PU11_65-114
CI=3.71


[115-126]:
1fkna_PU11_115-126
CI=0.29


[127-152]:
1fkna_PU11_127-152
CI=1.36


[153-176]:
1fkna_PU11_153-176
CI=0.07


[177-196]:
1fkna_PU11_177-196
CI=0.09


[197-233]:
1fkna_PU11_197-233
CI=2.26


[234-250]:
1fkna_PU11_234-250
CI=0.00


[251-271]:
1fkna_PU11_251-271
CI=0.26


[272-287]:
1fkna_PU11_272-287
CI=0.11


[288-306]:
1fkna_PU11_288-306
CI=2.38


[307-327]:
1fkna_PU11_307-327
CI=1.43


[328-343]:
1fkna_PU11_328-343
CI=0.11


[344-373]:
1fkna_PU11_344-373
CI=2.22


[374-391 ]:
1fkna_PU11_374-391
CI=0.00


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-17]:
1fkna_PU_1-17
CI=0.00


[18-46]:
1fkna_PU_18-46
CI=1.97


[47-64]:
1fkna_PU_47-64
CI=1.12


[65-88]:
1fkna_PU_65-88
CI=2.59


[89-114]:
1fkna_PU_89-114
CI=1.24


[115-126]:
1fkna_PU_115-126
CI=0.29


[127-152]:
1fkna_PU_127-152
CI=1.36


[153-176]:
1fkna_PU_153-176
CI=0.07


[177-196]:
1fkna_PU_177-196
CI=0.09


[197-233]:
1fkna_PU_197-233
CI=2.26


[234-250]:
1fkna_PU_234-250
CI=0.00


[251-271]:
1fkna_PU_251-271
CI=0.26


[272-287]:
1fkna_PU_272-287
CI=0.11


[288-306]:
1fkna_PU_288-306
CI=2.38


[307-327]:
1fkna_PU_307-327
CI=1.43


[328-343]:
1fkna_PU_328-343
CI=0.11


[344-373]:
1fkna_PU_344-373
CI=2.22


[374-391 ]:
1fkna_PU_374-391
CI=0.00