Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-67]:
1flma_PU0_1-67
CI=2.73


[68-83]:
1flma_PU0_68-83
CI=2.45


[84-122 ]:
1flma_PU0_84-122
CI=2.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1flma_PU1_1-47
CI=2.45


[48-67]:
1flma_PU1_48-67
CI=0.09


[68-83]:
1flma_PU1_68-83
CI=2.45


[84-122 ]:
1flma_PU1_84-122
CI=2.51


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1flma_PU2_1-31
CI=1.36


[32-47]:
1flma_PU2_32-47
CI=1.62


[48-67]:
1flma_PU2_48-67
CI=0.09


[68-83]:
1flma_PU2_68-83
CI=2.45


[84-122 ]:
1flma_PU2_84-122
CI=2.51


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1flma_PU_1-31
CI=1.36


[32-47]:
1flma_PU_32-47
CI=1.62


[48-67]:
1flma_PU_48-67
CI=0.09


[68-83]:
1flma_PU_68-83
CI=2.45


[84-103]:
1flma_PU_84-103
CI=0.09


[104-122 ]:
1flma_PU_104-122
CI=0.00