Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1fltx_PU0_1-48
CI=2.24


[49-95 ]:
1fltx_PU0_49-95
CI=3.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1fltx_PU1_1-21
CI=0.00


[22-48]:
1fltx_PU1_22-48
CI=0.76


[49-95 ]:
1fltx_PU1_49-95
CI=3.30


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1fltx_PU_1-21
CI=0.00


[22-48]:
1fltx_PU_22-48
CI=0.76


[49-65]:
1fltx_PU_49-65
CI=0.22


[66-95 ]:
1fltx_PU_66-95
CI=1.59