Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Final level 0

PU
Molecule needs Java 1.4 Structure


[1-31]:
1fm0d_PU_1-31
CI=1.96


[32-50]:
1fm0d_PU_32-50
CI=1.26


[51-81 ]:
1fm0d_PU_51-81
CI=2.39