Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-201]:
1fmta_PU0_1-201
CI=4.40


[202-308 ]:
1fmta_PU0_202-308
CI=4.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-99]:
1fmta_PU1_1-99
CI=3.66


[100-201]:
1fmta_PU1_100-201
CI=4.17


[202-308 ]:
1fmta_PU1_202-308
CI=4.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-58]:
1fmta_PU2_1-58
CI=2.91


[59-99]:
1fmta_PU2_59-99
CI=1.82


[100-201]:
1fmta_PU2_100-201
CI=4.17


[202-308 ]:
1fmta_PU2_202-308
CI=4.64


Level 3
PU
Molecule needs Java 1.4 Structure


[1-58]:
1fmta_PU3_1-58
CI=2.91


[59-99]:
1fmta_PU3_59-99
CI=1.82


[100-201]:
1fmta_PU3_100-201
CI=4.17


[202-243]:
1fmta_PU3_202-243
CI=2.22


[244-308 ]:
1fmta_PU3_244-308
CI=4.10


Level 4
PU
Molecule needs Java 1.4 Structure


[1-58]:
1fmta_PU4_1-58
CI=2.91


[59-75]:
1fmta_PU4_59-75
CI=0.43


[76-99]:
1fmta_PU4_76-99
CI=1.34


[100-201]:
1fmta_PU4_100-201
CI=4.17


[202-243]:
1fmta_PU4_202-243
CI=2.22


[244-308 ]:
1fmta_PU4_244-308
CI=4.10


Level 5
PU
Molecule needs Java 1.4 Structure


[1-58]:
1fmta_PU5_1-58
CI=2.91


[59-75]:
1fmta_PU5_59-75
CI=0.43


[76-99]:
1fmta_PU5_76-99
CI=1.34


[100-152]:
1fmta_PU5_100-152
CI=3.82


[153-186]:
1fmta_PU5_153-186
CI=0.17


[187-201]:
1fmta_PU5_187-201
CI=0.00


[202-243]:
1fmta_PU5_202-243
CI=2.22


[244-308 ]:
1fmta_PU5_244-308
CI=4.10


Level 6
PU
Molecule needs Java 1.4 Structure


[1-58]:
1fmta_PU6_1-58
CI=2.91


[59-75]:
1fmta_PU6_59-75
CI=0.43


[76-99]:
1fmta_PU6_76-99
CI=1.34


[100-152]:
1fmta_PU6_100-152
CI=3.82


[153-170]:
1fmta_PU6_153-170
CI=0.00


[171-186]:
1fmta_PU6_171-186
CI=0.34


[187-201]:
1fmta_PU6_187-201
CI=0.00


[202-243]:
1fmta_PU6_202-243
CI=2.22


[244-308 ]:
1fmta_PU6_244-308
CI=4.10


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fmta_PU7_1-32
CI=1.60


[33-58]:
1fmta_PU7_33-58
CI=1.37


[59-75]:
1fmta_PU7_59-75
CI=0.43


[76-99]:
1fmta_PU7_76-99
CI=1.34


[100-152]:
1fmta_PU7_100-152
CI=3.82


[153-170]:
1fmta_PU7_153-170
CI=0.00


[171-186]:
1fmta_PU7_171-186
CI=0.34


[187-201]:
1fmta_PU7_187-201
CI=0.00


[202-243]:
1fmta_PU7_202-243
CI=2.22


[244-308 ]:
1fmta_PU7_244-308
CI=4.10


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1fmta_PU8_1-32
CI=1.60


[33-58]:
1fmta_PU8_33-58
CI=1.37


[59-75]:
1fmta_PU8_59-75
CI=0.43


[76-99]:
1fmta_PU8_76-99
CI=1.34


[100-152]:
1fmta_PU8_100-152
CI=3.82


[153-170]:
1fmta_PU8_153-170
CI=0.00


[171-186]:
1fmta_PU8_171-186
CI=0.34


[187-201]:
1fmta_PU8_187-201
CI=0.00


[202-220]:
1fmta_PU8_202-220
CI=0.19


[221-243]:
1fmta_PU8_221-243
CI=2.27


[244-308 ]:
1fmta_PU8_244-308
CI=4.10


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-32]:
1fmta_PU_1-32
CI=1.60


[33-58]:
1fmta_PU_33-58
CI=1.37


[59-75]:
1fmta_PU_59-75
CI=0.43


[76-99]:
1fmta_PU_76-99
CI=1.34


[100-152]:
1fmta_PU_100-152
CI=3.82


[153-170]:
1fmta_PU_153-170
CI=0.00


[171-186]:
1fmta_PU_171-186
CI=0.34


[187-201]:
1fmta_PU_187-201
CI=0.00


[202-220]:
1fmta_PU_202-220
CI=0.19


[221-243]:
1fmta_PU_221-243
CI=2.27


[244-282]:
1fmta_PU_244-282
CI=3.83


[283-308 ]:
1fmta_PU_283-308
CI=0.35