Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU0_1-23
CI=0.40


[24-79]:
1fn9a_PU0_24-79
CI=3.23


[80-365 ]:
1fn9a_PU0_80-365
CI=3.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU1_1-23
CI=0.40


[24-79]:
1fn9a_PU1_24-79
CI=3.23


[80-298]:
1fn9a_PU1_80-298
CI=3.15


[299-326]:
1fn9a_PU1_299-326
CI=1.06


[327-365 ]:
1fn9a_PU1_327-365
CI=0.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU2_1-23
CI=0.40


[24-79]:
1fn9a_PU2_24-79
CI=3.23


[80-298]:
1fn9a_PU2_80-298
CI=3.15


[299-326]:
1fn9a_PU2_299-326
CI=1.06


[327-343]:
1fn9a_PU2_327-343
CI=0.21


[344-365 ]:
1fn9a_PU2_344-365
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU3_1-23
CI=0.40


[24-79]:
1fn9a_PU3_24-79
CI=3.23


[80-104]:
1fn9a_PU3_80-104
CI=0.00


[105-131]:
1fn9a_PU3_105-131
CI=1.03


[132-298]:
1fn9a_PU3_132-298
CI=2.79


[299-326]:
1fn9a_PU3_299-326
CI=1.06


[327-343]:
1fn9a_PU3_327-343
CI=0.21


[344-365 ]:
1fn9a_PU3_344-365
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU4_1-23
CI=0.40


[24-79]:
1fn9a_PU4_24-79
CI=3.23


[80-104]:
1fn9a_PU4_80-104
CI=0.00


[105-131]:
1fn9a_PU4_105-131
CI=1.03


[132-224]:
1fn9a_PU4_132-224
CI=0.97


[225-243]:
1fn9a_PU4_225-243
CI=0.19


[244-298]:
1fn9a_PU4_244-298
CI=2.74


[299-326]:
1fn9a_PU4_299-326
CI=1.06


[327-343]:
1fn9a_PU4_327-343
CI=0.21


[344-365 ]:
1fn9a_PU4_344-365
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU5_1-23
CI=0.40


[24-79]:
1fn9a_PU5_24-79
CI=3.23


[80-104]:
1fn9a_PU5_80-104
CI=0.00


[105-131]:
1fn9a_PU5_105-131
CI=1.03


[132-154]:
1fn9a_PU5_132-154
CI=1.05


[155-180]:
1fn9a_PU5_155-180
CI=0.14


[181-224]:
1fn9a_PU5_181-224
CI=0.68


[225-243]:
1fn9a_PU5_225-243
CI=0.19


[244-298]:
1fn9a_PU5_244-298
CI=2.74


[299-326]:
1fn9a_PU5_299-326
CI=1.06


[327-343]:
1fn9a_PU5_327-343
CI=0.21


[344-365 ]:
1fn9a_PU5_344-365
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU6_1-23
CI=0.40


[24-40]:
1fn9a_PU6_24-40
CI=1.74


[41-79]:
1fn9a_PU6_41-79
CI=2.99


[80-104]:
1fn9a_PU6_80-104
CI=0.00


[105-131]:
1fn9a_PU6_105-131
CI=1.03


[132-154]:
1fn9a_PU6_132-154
CI=1.05


[155-180]:
1fn9a_PU6_155-180
CI=0.14


[181-224]:
1fn9a_PU6_181-224
CI=0.68


[225-243]:
1fn9a_PU6_225-243
CI=0.19


[244-298]:
1fn9a_PU6_244-298
CI=2.74


[299-326]:
1fn9a_PU6_299-326
CI=1.06


[327-343]:
1fn9a_PU6_327-343
CI=0.21


[344-365 ]:
1fn9a_PU6_344-365
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-23]:
1fn9a_PU_1-23
CI=0.40


[24-40]:
1fn9a_PU_24-40
CI=1.74


[41-79]:
1fn9a_PU_41-79
CI=2.99


[80-104]:
1fn9a_PU_80-104
CI=0.00


[105-131]:
1fn9a_PU_105-131
CI=1.03


[132-154]:
1fn9a_PU_132-154
CI=1.05


[155-180]:
1fn9a_PU_155-180
CI=0.14


[181-224]:
1fn9a_PU_181-224
CI=0.68


[225-243]:
1fn9a_PU_225-243
CI=0.19


[244-280]:
1fn9a_PU_244-280
CI=2.94


[281-298]:
1fn9a_PU_281-298
CI=0.00


[299-326]:
1fn9a_PU_299-326
CI=1.06


[327-343]:
1fn9a_PU_327-343
CI=0.21


[344-365 ]:
1fn9a_PU_344-365
CI=0.00