Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1fna0_PU0_1-18
CI=2.49


[19-49]:
1fna0_PU0_19-49
CI=2.57


[50-91 ]:
1fna0_PU0_50-91
CI=2.42


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1fna0_PU_1-18
CI=2.49


[19-49]:
1fna0_PU_19-49
CI=2.57


[50-69]:
1fna0_PU_50-69
CI=0.09


[70-91 ]:
1fna0_PU_70-91
CI=0.34