Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-236]:
1fo8a_PU0_1-236
CI=4.01


[237-330 ]:
1fo8a_PU0_237-330
CI=2.88


Level 1
PU
Molecule needs Java 1.4 Structure


[1-111]:
1fo8a_PU1_1-111
CI=2.92


[112-236]:
1fo8a_PU1_112-236
CI=3.70


[237-330 ]:
1fo8a_PU1_237-330
CI=2.88


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU2_1-65
CI=3.07


[66-82]:
1fo8a_PU2_66-82
CI=0.73


[83-111]:
1fo8a_PU2_83-111
CI=0.44


[112-236]:
1fo8a_PU2_112-236
CI=3.70


[237-330 ]:
1fo8a_PU2_237-330
CI=2.88


Level 3
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU3_1-65
CI=3.07


[66-82]:
1fo8a_PU3_66-82
CI=0.73


[83-111]:
1fo8a_PU3_83-111
CI=0.44


[112-170]:
1fo8a_PU3_112-170
CI=1.55


[171-198]:
1fo8a_PU3_171-198
CI=0.27


[199-236]:
1fo8a_PU3_199-236
CI=0.90


[237-330 ]:
1fo8a_PU3_237-330
CI=2.88


Level 4
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU4_1-65
CI=3.07


[66-82]:
1fo8a_PU4_66-82
CI=0.73


[83-111]:
1fo8a_PU4_83-111
CI=0.44


[112-170]:
1fo8a_PU4_112-170
CI=1.55


[171-198]:
1fo8a_PU4_171-198
CI=0.27


[199-220]:
1fo8a_PU4_199-220
CI=1.45


[221-236]:
1fo8a_PU4_221-236
CI=0.00


[237-330 ]:
1fo8a_PU4_237-330
CI=2.88


Level 5
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU5_1-65
CI=3.07


[66-82]:
1fo8a_PU5_66-82
CI=0.73


[83-111]:
1fo8a_PU5_83-111
CI=0.44


[112-131]:
1fo8a_PU5_112-131
CI=0.00


[132-170]:
1fo8a_PU5_132-170
CI=1.57


[171-198]:
1fo8a_PU5_171-198
CI=0.27


[199-220]:
1fo8a_PU5_199-220
CI=1.45


[221-236]:
1fo8a_PU5_221-236
CI=0.00


[237-330 ]:
1fo8a_PU5_237-330
CI=2.88


Level 6
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU6_1-65
CI=3.07


[66-82]:
1fo8a_PU6_66-82
CI=0.73


[83-111]:
1fo8a_PU6_83-111
CI=0.44


[112-131]:
1fo8a_PU6_112-131
CI=0.00


[132-170]:
1fo8a_PU6_132-170
CI=1.57


[171-198]:
1fo8a_PU6_171-198
CI=0.27


[199-220]:
1fo8a_PU6_199-220
CI=1.45


[221-236]:
1fo8a_PU6_221-236
CI=0.00


[237-272]:
1fo8a_PU6_237-272
CI=1.06


[273-330 ]:
1fo8a_PU6_273-330
CI=2.75


Level 7
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU7_1-65
CI=3.07


[66-82]:
1fo8a_PU7_66-82
CI=0.73


[83-111]:
1fo8a_PU7_83-111
CI=0.44


[112-131]:
1fo8a_PU7_112-131
CI=0.00


[132-170]:
1fo8a_PU7_132-170
CI=1.57


[171-198]:
1fo8a_PU7_171-198
CI=0.27


[199-220]:
1fo8a_PU7_199-220
CI=1.45


[221-236]:
1fo8a_PU7_221-236
CI=0.00


[237-253]:
1fo8a_PU7_237-253
CI=0.00


[254-272]:
1fo8a_PU7_254-272
CI=0.39


[273-330 ]:
1fo8a_PU7_273-330
CI=2.75


Level 8
PU
Molecule needs Java 1.4 Structure


[1-65]:
1fo8a_PU8_1-65
CI=3.07


[66-82]:
1fo8a_PU8_66-82
CI=0.73


[83-111]:
1fo8a_PU8_83-111
CI=0.44


[112-131]:
1fo8a_PU8_112-131
CI=0.00


[132-170]:
1fo8a_PU8_132-170
CI=1.57


[171-198]:
1fo8a_PU8_171-198
CI=0.27


[199-220]:
1fo8a_PU8_199-220
CI=1.45


[221-236]:
1fo8a_PU8_221-236
CI=0.00


[237-253]:
1fo8a_PU8_237-253
CI=0.00


[254-272]:
1fo8a_PU8_254-272
CI=0.39


[273-290]:
1fo8a_PU8_273-290
CI=0.62


[291-330 ]:
1fo8a_PU8_291-330
CI=2.86


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1fo8a_PU_1-17
CI=0.22


[18-33]:
1fo8a_PU_18-33
CI=0.11


[34-65]:
1fo8a_PU_34-65
CI=2.23


[66-82]:
1fo8a_PU_66-82
CI=0.73


[83-111]:
1fo8a_PU_83-111
CI=0.44


[112-131]:
1fo8a_PU_112-131
CI=0.00


[132-170]:
1fo8a_PU_132-170
CI=1.57


[171-198]:
1fo8a_PU_171-198
CI=0.27


[199-220]:
1fo8a_PU_199-220
CI=1.45


[221-236]:
1fo8a_PU_221-236
CI=0.00


[237-253]:
1fo8a_PU_237-253
CI=0.00


[254-272]:
1fo8a_PU_254-272
CI=0.39


[273-290]:
1fo8a_PU_273-290
CI=0.62


[291-330 ]:
1fo8a_PU_291-330
CI=2.86