Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1fpoa_PU0_1-71
CI=1.71


[72-171 ]:
1fpoa_PU0_72-171
CI=1.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1fpoa_PU1_1-26
CI=0.43


[27-55]:
1fpoa_PU1_27-55
CI=1.92


[56-71]:
1fpoa_PU1_56-71
CI=1.13


[72-171 ]:
1fpoa_PU1_72-171
CI=1.66


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1fpoa_PU2_1-26
CI=0.43


[27-55]:
1fpoa_PU2_27-55
CI=1.92


[56-71]:
1fpoa_PU2_56-71
CI=1.13


[72-87]:
1fpoa_PU2_72-87
CI=0.34


[88-117]:
1fpoa_PU2_88-117
CI=0.55


[118-171 ]:
1fpoa_PU2_118-171
CI=1.48


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1fpoa_PU3_1-26
CI=0.43


[27-55]:
1fpoa_PU3_27-55
CI=1.92


[56-71]:
1fpoa_PU3_56-71
CI=1.13


[72-87]:
1fpoa_PU3_72-87
CI=0.34


[88-117]:
1fpoa_PU3_88-117
CI=0.55


[118-154]:
1fpoa_PU3_118-154
CI=1.53


[155-171 ]:
1fpoa_PU3_155-171
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-26]:
1fpoa_PU_1-26
CI=0.43


[27-55]:
1fpoa_PU_27-55
CI=1.92


[56-71]:
1fpoa_PU_56-71
CI=1.13


[72-87]:
1fpoa_PU_72-87
CI=0.34


[88-117]:
1fpoa_PU_88-117
CI=0.55


[118-134]:
1fpoa_PU_118-134
CI=0.00


[135-154]:
1fpoa_PU_135-154
CI=0.64


[155-171 ]:
1fpoa_PU_155-171
CI=0.00