Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1fqia_PU0_1-40
CI=0.71


[41-110]:
1fqia_PU0_41-110
CI=2.09


[111-133 ]:
1fqia_PU0_111-133
CI=0.17


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1fqia_PU1_1-24
CI=0.39


[25-40]:
1fqia_PU1_25-40
CI=0.34


[41-110]:
1fqia_PU1_41-110
CI=2.09


[111-133 ]:
1fqia_PU1_111-133
CI=0.17


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1fqia_PU_1-24
CI=0.39


[25-40]:
1fqia_PU_25-40
CI=0.34


[41-65]:
1fqia_PU_41-65
CI=0.30


[66-81]:
1fqia_PU_66-81
CI=2.29


[82-110]:
1fqia_PU_82-110
CI=0.91


[111-133 ]:
1fqia_PU_111-133
CI=0.17