Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1fqta_PU0_1-41
CI=3.14


[42-86]:
1fqta_PU0_42-86
CI=4.53


[87-109 ]:
1fqta_PU0_87-109
CI=2.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1fqta_PU1_1-41
CI=3.14


[42-67]:
1fqta_PU1_42-67
CI=2.37


[68-86]:
1fqta_PU1_68-86
CI=3.33


[87-109 ]:
1fqta_PU1_87-109
CI=2.30


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1fqta_PU_1-21
CI=0.45


[22-41]:
1fqta_PU_22-41
CI=2.07


[42-67]:
1fqta_PU_42-67
CI=2.37


[68-86]:
1fqta_PU_68-86
CI=3.33


[87-109 ]:
1fqta_PU_87-109
CI=2.30