Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1fr2a_PU0_1-16
CI=0.46


[17-69]:
1fr2a_PU0_17-69
CI=1.72


[70-83 ]:
1fr2a_PU0_70-83
CI=0.52


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1fr2a_PU_1-16
CI=0.46


[17-37]:
1fr2a_PU_17-37
CI=0.80


[38-69]:
1fr2a_PU_38-69
CI=1.17


[70-83 ]:
1fr2a_PU_70-83
CI=0.52