Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-162]:
1fs5a_PU0_1-162
CI=2.86


[163-182]:
1fs5a_PU0_163-182
CI=1.47


[183-266 ]:
1fs5a_PU0_183-266
CI=2.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-162]:
1fs5a_PU1_1-162
CI=2.86


[163-182]:
1fs5a_PU1_163-182
CI=1.47


[183-247]:
1fs5a_PU1_183-247
CI=2.99


[248-266 ]:
1fs5a_PU1_248-266
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-137]:
1fs5a_PU2_1-137
CI=2.91


[138-162]:
1fs5a_PU2_138-162
CI=0.89


[163-182]:
1fs5a_PU2_163-182
CI=1.47


[183-247]:
1fs5a_PU2_183-247
CI=2.99


[248-266 ]:
1fs5a_PU2_248-266
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-70]:
1fs5a_PU3_1-70
CI=1.92


[71-127]:
1fs5a_PU3_71-127
CI=1.44


[128-137]:
1fs5a_PU3_128-137
CI=0.00


[138-162]:
1fs5a_PU3_138-162
CI=0.89


[163-182]:
1fs5a_PU3_163-182
CI=1.47


[183-247]:
1fs5a_PU3_183-247
CI=2.99


[248-266 ]:
1fs5a_PU3_248-266
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-70]:
1fs5a_PU4_1-70
CI=1.92


[71-110]:
1fs5a_PU4_71-110
CI=1.70


[111-127]:
1fs5a_PU4_111-127
CI=0.11


[128-137]:
1fs5a_PU4_128-137
CI=0.00


[138-162]:
1fs5a_PU4_138-162
CI=0.89


[163-182]:
1fs5a_PU4_163-182
CI=1.47


[183-247]:
1fs5a_PU4_183-247
CI=2.99


[248-266 ]:
1fs5a_PU4_248-266
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-70]:
1fs5a_PU5_1-70
CI=1.92


[71-110]:
1fs5a_PU5_71-110
CI=1.70


[111-127]:
1fs5a_PU5_111-127
CI=0.11


[128-137]:
1fs5a_PU5_128-137
CI=0.00


[138-162]:
1fs5a_PU5_138-162
CI=0.89


[163-182]:
1fs5a_PU5_163-182
CI=1.47


[183-202]:
1fs5a_PU5_183-202
CI=0.09


[203-247]:
1fs5a_PU5_203-247
CI=2.88


[248-266 ]:
1fs5a_PU5_248-266
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fs5a_PU6_1-17
CI=0.11


[18-70]:
1fs5a_PU6_18-70
CI=1.63


[71-110]:
1fs5a_PU6_71-110
CI=1.70


[111-127]:
1fs5a_PU6_111-127
CI=0.11


[128-137]:
1fs5a_PU6_128-137
CI=0.00


[138-162]:
1fs5a_PU6_138-162
CI=0.89


[163-182]:
1fs5a_PU6_163-182
CI=1.47


[183-202]:
1fs5a_PU6_183-202
CI=0.09


[203-247]:
1fs5a_PU6_203-247
CI=2.88


[248-266 ]:
1fs5a_PU6_248-266
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fs5a_PU7_1-17
CI=0.11


[18-38]:
1fs5a_PU7_18-38
CI=0.35


[39-70]:
1fs5a_PU7_39-70
CI=0.53


[71-110]:
1fs5a_PU7_71-110
CI=1.70


[111-127]:
1fs5a_PU7_111-127
CI=0.11


[128-137]:
1fs5a_PU7_128-137
CI=0.00


[138-162]:
1fs5a_PU7_138-162
CI=0.89


[163-182]:
1fs5a_PU7_163-182
CI=1.47


[183-202]:
1fs5a_PU7_183-202
CI=0.09


[203-247]:
1fs5a_PU7_203-247
CI=2.88


[248-266 ]:
1fs5a_PU7_248-266
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1fs5a_PU8_1-17
CI=0.11


[18-38]:
1fs5a_PU8_18-38
CI=0.35


[39-70]:
1fs5a_PU8_39-70
CI=0.53


[71-92]:
1fs5a_PU8_71-92
CI=1.34


[93-110]:
1fs5a_PU8_93-110
CI=0.00


[111-127]:
1fs5a_PU8_111-127
CI=0.11


[128-137]:
1fs5a_PU8_128-137
CI=0.00


[138-162]:
1fs5a_PU8_138-162
CI=0.89


[163-182]:
1fs5a_PU8_163-182
CI=1.47


[183-202]:
1fs5a_PU8_183-202
CI=0.09


[203-247]:
1fs5a_PU8_203-247
CI=2.88


[248-266 ]:
1fs5a_PU8_248-266
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1fs5a_PU_1-17
CI=0.11


[18-38]:
1fs5a_PU_18-38
CI=0.35


[39-70]:
1fs5a_PU_39-70
CI=0.53


[71-92]:
1fs5a_PU_71-92
CI=1.34


[93-110]:
1fs5a_PU_93-110
CI=0.00


[111-127]:
1fs5a_PU_111-127
CI=0.11


[128-137]:
1fs5a_PU_128-137
CI=0.00


[138-162]:
1fs5a_PU_138-162
CI=0.89


[163-182]:
1fs5a_PU_163-182
CI=1.47


[183-202]:
1fs5a_PU_183-202
CI=0.09


[203-230]:
1fs5a_PU_203-230
CI=1.47


[231-247]:
1fs5a_PU_231-247
CI=0.00


[248-266 ]:
1fs5a_PU_248-266
CI=0.00