Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU0_1-17
CI=0.54


[18-163]:
1ftra_PU0_18-163
CI=5.10


[164-296 ]:
1ftra_PU0_164-296
CI=3.74


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU1_1-17
CI=0.54


[18-163]:
1ftra_PU1_18-163
CI=5.10


[164-207]:
1ftra_PU1_164-207
CI=0.77


[208-238]:
1ftra_PU1_208-238
CI=2.17


[239-296 ]:
1ftra_PU1_239-296
CI=0.55


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU2_1-17
CI=0.54


[18-163]:
1ftra_PU2_18-163
CI=5.10


[164-207]:
1ftra_PU2_164-207
CI=0.77


[208-238]:
1ftra_PU2_208-238
CI=2.17


[239-277]:
1ftra_PU2_239-277
CI=0.34


[278-296 ]:
1ftra_PU2_278-296
CI=0.37


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU3_1-17
CI=0.54


[18-118]:
1ftra_PU3_18-118
CI=4.21


[119-155]:
1ftra_PU3_119-155
CI=3.31


[156-163]:
1ftra_PU3_156-163
CI=0.00


[164-207]:
1ftra_PU3_164-207
CI=0.77


[208-238]:
1ftra_PU3_208-238
CI=2.17


[239-277]:
1ftra_PU3_239-277
CI=0.34


[278-296 ]:
1ftra_PU3_278-296
CI=0.37


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU4_1-17
CI=0.54


[18-118]:
1ftra_PU4_18-118
CI=4.21


[119-155]:
1ftra_PU4_119-155
CI=3.31


[156-163]:
1ftra_PU4_156-163
CI=0.00


[164-183]:
1ftra_PU4_164-183
CI=0.46


[184-207]:
1ftra_PU4_184-207
CI=0.92


[208-238]:
1ftra_PU4_208-238
CI=2.17


[239-277]:
1ftra_PU4_239-277
CI=0.34


[278-296 ]:
1ftra_PU4_278-296
CI=0.37


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU5_1-17
CI=0.54


[18-118]:
1ftra_PU5_18-118
CI=4.21


[119-155]:
1ftra_PU5_119-155
CI=3.31


[156-163]:
1ftra_PU5_156-163
CI=0.00


[164-183]:
1ftra_PU5_164-183
CI=0.46


[184-207]:
1ftra_PU5_184-207
CI=0.92


[208-238]:
1ftra_PU5_208-238
CI=2.17


[239-260]:
1ftra_PU5_239-260
CI=0.42


[261-277]:
1ftra_PU5_261-277
CI=0.11


[278-296 ]:
1ftra_PU5_278-296
CI=0.37


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU6_1-17
CI=0.54


[18-40]:
1ftra_PU6_18-40
CI=0.41


[41-78]:
1ftra_PU6_41-78
CI=3.78


[79-118]:
1ftra_PU6_79-118
CI=0.39


[119-155]:
1ftra_PU6_119-155
CI=3.31


[156-163]:
1ftra_PU6_156-163
CI=0.00


[164-183]:
1ftra_PU6_164-183
CI=0.46


[184-207]:
1ftra_PU6_184-207
CI=0.92


[208-238]:
1ftra_PU6_208-238
CI=2.17


[239-260]:
1ftra_PU6_239-260
CI=0.42


[261-277]:
1ftra_PU6_261-277
CI=0.11


[278-296 ]:
1ftra_PU6_278-296
CI=0.37


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU7_1-17
CI=0.54


[18-40]:
1ftra_PU7_18-40
CI=0.41


[41-78]:
1ftra_PU7_41-78
CI=3.78


[79-102]:
1ftra_PU7_79-102
CI=0.08


[103-118]:
1ftra_PU7_103-118
CI=0.00


[119-155]:
1ftra_PU7_119-155
CI=3.31


[156-163]:
1ftra_PU7_156-163
CI=0.00


[164-183]:
1ftra_PU7_164-183
CI=0.46


[184-207]:
1ftra_PU7_184-207
CI=0.92


[208-238]:
1ftra_PU7_208-238
CI=2.17


[239-260]:
1ftra_PU7_239-260
CI=0.42


[261-277]:
1ftra_PU7_261-277
CI=0.11


[278-296 ]:
1ftra_PU7_278-296
CI=0.37


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU8_1-17
CI=0.54


[18-40]:
1ftra_PU8_18-40
CI=0.41


[41-60]:
1ftra_PU8_41-60
CI=2.61


[61-78]:
1ftra_PU8_61-78
CI=1.34


[79-102]:
1ftra_PU8_79-102
CI=0.08


[103-118]:
1ftra_PU8_103-118
CI=0.00


[119-155]:
1ftra_PU8_119-155
CI=3.31


[156-163]:
1ftra_PU8_156-163
CI=0.00


[164-183]:
1ftra_PU8_164-183
CI=0.46


[184-207]:
1ftra_PU8_184-207
CI=0.92


[208-238]:
1ftra_PU8_208-238
CI=2.17


[239-260]:
1ftra_PU8_239-260
CI=0.42


[261-277]:
1ftra_PU8_261-277
CI=0.11


[278-296 ]:
1ftra_PU8_278-296
CI=0.37


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ftra_PU_1-17
CI=0.54


[18-40]:
1ftra_PU_18-40
CI=0.41


[41-60]:
1ftra_PU_41-60
CI=2.61


[61-78]:
1ftra_PU_61-78
CI=1.34


[79-102]:
1ftra_PU_79-102
CI=0.08


[103-118]:
1ftra_PU_103-118
CI=0.00


[119-136]:
1ftra_PU_119-136
CI=0.20


[137-155]:
1ftra_PU_137-155
CI=1.79


[156-163]:
1ftra_PU_156-163
CI=0.00


[164-183]:
1ftra_PU_164-183
CI=0.46


[184-207]:
1ftra_PU_184-207
CI=0.92


[208-238]:
1ftra_PU_208-238
CI=2.17


[239-260]:
1ftra_PU_239-260
CI=0.42


[261-277]:
1ftra_PU_261-277
CI=0.11


[278-296 ]:
1ftra_PU_278-296
CI=0.37